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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATATCGAAGGCTAGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaattcaatacatatttatacccttttcaaaaaattgttgttttgaagtaatttgagtgtgtttgtttgttttccccttgaaagttgtgattt...

Basic information

species Glycine max
transcript GLYMA18G43110.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208187715|gb|GD985997.1|GD985997
EST:     AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGA                         TGTTTTGAGTGAT
genomic: AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaa ... ttgtgaaacaGGTTTTGAGTGAT
EST: gi|298184247|gb|HO029460.1|HO029460
EST:     AACAAGAAAGAGGCTGAAGCCAAATTCAAGCAAACCTCCGAAGCTTATGA                         TGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
genomic: AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaa ... ttgtgaaacaGGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
EST: gi|254337804|gb|GR849543.1|GR849543
EST:     AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGGAGCTTATGA                         TGTTTTGAGTGATCCACACAAGCGAGGAATTTATGATCAGTATGGTGAGGA
genomic: AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaa ... ttgtgaaacaGGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
EST: gi|15813510|gb|BI785785.1|BI785785
EST:     AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGA                         TGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
genomic: AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaa ... ttgtgaaacaGGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
EST: gi|10236014|gb|BE804962.1|BE804962
EST:     AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGA                         TGTTCTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
genomic: AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaa ... ttgtgaaacaGGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
EST: gi|15813592|gb|BI785867.1|BI785867
EST:     AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGA                         TGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA
genomic: AACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaa ... ttgtgaaacaGGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCATATCGAAGGCTAGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGAtgtatgtcaattcaatacatatttatacccttttcaaaaaattgttgttttgaagtaatttgagtgtgtttgtttgttttccccttgaaagttgtgattt

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccc