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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag

Basic information

species Glycine max
transcript GLYMA18G43020.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgt-tattgtttgaaatttgaatct---tcgtcaagtgtttcgtg---ggtttgaatgaaatgtttgtgact----ttgtgtgcag-------------
|||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | || | | || || | || ||| | | | | | || | | |||||| ||| | ||||| |
CCATGAAGACCCTCTGGCTCGCCGTCTACATCGCCGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagtagtatacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgta-cgaggtttttgttattgtttgaaatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag
|||||| | |||||||||| || |||||| | |||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| | | ||||| ||||| || | | ||| | | |||| || | ||| |||||
CCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAgtaacctcacccccctcgctgtttccctaccttctcttcttcca----tccgtccgct--gatgatttggacccgccttccc-tgcag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatttgaatcttc---gtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag--------------
|||||||||| || ||||| || | || ||| | ||||| | ||||| ||||| |||||||||||||| ||||| ||||| || |||||||||||||||| || | || | | ||| || | || || || | ||| | | |||| | |||||| || | | |
CCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAgttcgtagcttg-atgaaattttagtatctctatgttgtaagttttgagttaatcgaatactgatgaca-atttgtgggctttttttctttcgttttttcacag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggttt-----ttgttattgtttgaaatttgaatcttcgtcaagtgttt-cgtgggtttg--aatgaaatg--tttgtgactttgtgtgcag
| |||||||| || ||||| || || ||||| | ||||| || || ||||||||| ||||||||||||| ||||| ||||| || |||||||||||||||| | | || || || ||| ||||| | | | | || | || ||| ||| || ||||| ||| |||||
CTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAgtttgtttctccacgatttttttttttttttttttgagttattattagttggtaatgtaaagttgttgatgttgtgggcttgtgttttttactgcag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatt--tgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgt---gactttgtgtgcag----------
| |||| ||| || |||||||| | ||||| | || || || ||||| ||||| || || |||||||||||||||| |||||| |||||||||||||||| | ||| | | | || | ||| ||| ||||| | | | | | ||| || | | || ||| || || | |
CGATGAGGGATCTGTGGCTCGCCATTTACATTGTTGATGCTGTACTCGTATTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactttagggtttctattaatattgctgagatttcgt--atttctccttttgttagagttgattggttgctgcgagactgaaggaaaataaaataaa

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32053 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag
||||||||||||||||| || ||||||||| ||||||| || ||||||||||| || || || || | ||||||| |||||| || ||||| || ||||| | || | || || ||| || | | | | || ||||| | | | || | | | |
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACAATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattacta--gtttctttccattcga----ttggcttgagtcctcattgtttgtgtttatttttcctttcatag-------

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37798 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttga--aatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag
||||||||||||||||| || ||||||||| ||||||| || ||||||||||| || || || || | ||||||| |||||| || ||||| || ||||| | || | | || || || |||| | || | ||| | | ||| | | |
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACGATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattactagt-ttcttcgattggcttgagttctcattgtttgtgtt-tatttttcctttcacag-------------------