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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag

Basic information

species Glycine max
transcript GLYMA18G43020.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgt-tattgtttgaaatttgaatct---tcgtcaagtgtttcgtg---ggtttgaatgaaatgtttgtgact----ttgtgtgcag-------------
||||||||  |||||||||||| |||||||||  ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |  || |   | ||   ||  |   ||   |||    | |   |  | |  ||      |   |   ||||||  ||| |      |||||  |             
CCATGAAGACCCTCTGGCTCGCCGTCTACATCGCCGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagtagtatacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgta-cgaggtttttgttattgtttgaaatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag
|||||| |   ||||||||||  || |||||| | |||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |          |   |||||          ||||| || |    | |||  | |   ||||  ||     | |||    |||||
CCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAgtaacctcacccccctcgctgtttccctaccttctcttcttcca----tccgtccgct--gatgatttggacccgccttccc-tgcag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatttgaatcttc---gtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag--------------
|||||||||| || ||||| ||  | || ||| | |||||  | ||||| ||||| |||||||||||||| ||||| ||||| || |||||||||||||||| ||  | ||   | |   |||   || |  || ||    ||   | |||    |  |    |||| |  ||||||   || | | |                
CCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAgttcgtagcttg-atgaaattttagtatctctatgttgtaagttttgagttaatcgaatactgatgaca-atttgtgggctttttttctttcgttttttcacag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggttt-----ttgttattgtttgaaatttgaatcttcgtcaagtgttt-cgtgggtttg--aatgaaatg--tttgtgactttgtgtgcag
| |||||||| || ||||| || || |||||  | ||||| || || ||||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||  |    |      || || || |||    ||||| |  |  | |  || |   ||    |||   |||   ||   |||||  |||   |||||
CTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAgtttgtttctccacgatttttttttttttttttttgagttattattagttggtaatgtaaagttgttgatgttgtgggcttgtgttttttactgcag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatt--tgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgt---gactttgtgtgcag----------
| |||| ||| || ||||||||  | |||||  | || || || ||||| ||||| || || |||||||||||||||| |||||| ||||||||||||||||  |   |||  | | |   || | |||  |||   |||||  | |  | | |  ||| || |  | || |||    ||   ||   | |           
CGATGAGGGATCTGTGGCTCGCCATTTACATTGTTGATGCTGTACTCGTATTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactttagggtttctattaatattgctgagatttcgt--atttctccttttgttagagttgattggttgctgcgagactgaaggaaaataaaataaa

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32053 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttgaaatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag
|||||||||||||||||   || ||||||||| ||||||| || ||||||||||| || || || ||  | ||||||| |||||| || ||||| || ||||| |   ||  |    ||  ||   ||| ||    | | |  | ||       |||||  |  | | ||  |  | | |       
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACAATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattacta--gtttctttccattcga----ttggcttgagtcctcattgtttgtgtttatttttcctttcatag-------

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37798 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAGTCTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgaggtttttgttattgtttga--aatttgaatcttcgtcaagtgtttcgtgggtttgaatgaaatgtttgtgactttgtgtgcag
|||||||||||||||||   || ||||||||| ||||||| || ||||||||||| || || || ||  | ||||||| |||||| || ||||| || ||||| |   ||  |  | || || ||     |||| |  || |    ||| |  |   |||   |  |  |                   
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACGATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattactagt-ttcttcgattggcttgagttctcattgtttgtgtt-tatttttcctttcacag-------------------