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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTAAATTTGCAAGAGGTTATTCTTGGTACCAAGCTTTCCATTCTCATCCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctctcattacactttcttgtttttctcaaattcaactaattcaatcattcatcaattcaactaactcaatcatttccaagtaataacataaac...

Basic information

species Glycine max
transcript GLYMA18G43000.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534630|gb|EH262763.1|EH262763
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|6134179|gb|AW132572.1|AW132572
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|213602154|gb|DB962647.1|DB962647
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|26047871|gb|CA784524.1|CA784524
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|193683072|gb|FK621006.1|FK621006
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|151398007|gb|EV267885.1|EV267885
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|120495967|gb|EH224134.1|EH224134
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|9205154|gb|BE331378.1|BE331378
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|213601451|gb|DB968739.1|DB968739
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|20449496|gb|BQ253620.1|BQ253620
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|213620225|gb|DB965461.1|DB965461
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|193674641|gb|FK616879.1|FK616879
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTG
EST: gi|213618087|gb|DB963720.1|DB963720
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|120495266|gb|EH223433.1|EH223433
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|209705809|gb|BW661477.1|BW661477
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: gi|213611011|gb|DB970938.1|DB970938
EST:     CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC                         CCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGT
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcC-TTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTTAAATTTGCAAGAGGTTATTCTTGGTACCAAGCTTTCCATTCTCATCCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctctcattacactttcttgtttttctcaaattcaactaattcaatcattcatcaattcaactaactcaatcatttccaagtaataacataaac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc