1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGCAAGTTGCTGCTGCTTCTGGTGGTGGGGGTGGCTTTTTTGCTTCTATTGCTTCCAGTTTGTCCAATTTTGGCAGTGCCATGTCCAAATCCGTTAATGggtatgaatcctttggagttgaattttgaaagttgttaaatttatcatttttgatgtttttctctaggggtgtcccaagatcatcgattttcccctttta...
species | Glycine max |
transcript | GLYMA18G39880.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTTCCAGTTTGTCCAATTTTGGCAGTGCCATGTCCAAATCCGTTAATG GTTTGGTGGGCTACGAGGGGCTGGAGGTTATTAATCCAGAAGGAGGAACTGEST: gi|254320166|gb|GR829354.1|GR829354
genomic: TGCTTCCAGTTTGTCCAATTTTGGCAGTGCCATGTCCAAATCCGTTAATGggtatgaatc ... ttgttactcaGTTTGGTGGGCTACGAGGGGCTGGAGGTTATTAATCCAGAAGGAGGAACTG
EST: TGCTTCCAGTTTGTCCAATTTTGGCAGTGCCATGTCCAAATCCGTTAATG GTTTGGTGGGCTACGAGGGGCTGGAGGTTATTAATCCAGAAGGAGGAACTGEST: gi|254346587|gb|GR856309.1|GR856309
genomic: TGCTTCCAGTTTGTCCAATTTTGGCAGTGCCATGTCCAAATCCGTTAATGggtatgaatc ... ttgttactcaGTTTGGTGGGCTACGAGGGGCTGGAGGTTATTAATCCAGAAGGAGGAACTG
EST: GTCCAAATCCGTTAATG GTTTGGTGGGCTACGAGGGGCTGGAGGTTATTAATCCAGAAGGAGGAACTG
genomic: GTCCAAATCCGTTAATGggtatgaatc ... ttgttactcaGTTTGGTGGGCTACGAGGGGCTGGAGGTTATTAATCCAGAAGGAGGAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCAAGTTGCTGCTGCTTCTGGTGGTGGGGGTGGCTTTTTTGCTTCTATTGCTTCCAGTTTGTCCAATTTTGGCAGTGCCATGTCCAAATCCGTTAATGggtatgaatcctttggagttgaattttgaaagttgttaaatttatcatttttgatgtttttctctaggggtgtcccaagatcatcgattttcccctttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc