1 5' 3' | 2 5' 3' |
AGATCTGATGAAGCCATTGAAGCCATTCGTTCATTTAGAAGCCTTTGCTCCAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGGtattatacttaaaaaaatatccttttatttttacacattcaatttttaatttttttaatctctacggcgaggattaaaaataattaaaaaatagtatgta...
species | Glycine max |
transcript | GLYMA18G38050.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGA AATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGTEST: gi|51341464|gb|CO982781.1|CO982781
genomic: CAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGGtattatactt ... aaatgatagaAATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGT
EST: CAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGA AATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGTEST: gi|9203956|gb|BE330180.1|BE330180
genomic: CAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGGtattatactt ... aaatgatagaAATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGT
EST: CAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGA AATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGT
genomic: CAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGGtattatactt ... aaatgatagaAATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATCTGATGAAGCCATTGAAGCCATTCGTTCATTTAGAAGCCTTTGCTCCAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGGtattatacttaaaaaaatatccttttatttttacacattcaatttttaatttttttaatctctacggcgaggattaaaaataattaaaaaatagtatgta
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaataa