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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGATAAGCCTCTTCGCCCTCTCTTCAATGCGGGTTCCCTCTACTACAAGgttcttcctctctctcggtctcttactcttactcttacttcctag

Basic information

species Glycine max
transcript GLYMA18G27710.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 1
TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGATAAGCCTCTTCGCCCTCTCTTCAATGCGGGTTCCCTCTACTACAAGgttcttcctctctctcggtctcttactcttactcttacttcctag----------------------------------------------------------------------------------------------------------------------------------------------------
   | |||| ||||||||||||||||||||||| ||||||||||| ||  | || |||||  ||||     |||||||||  |||||| |||| |||| ||||||| || ||||     |   |     | |||  |      ||                                                                                                                                                    
GAAGAGAGAGATGGCGATGGCAATGGCGCTTCGGAGGCTTTCATCGTCCGTCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagacggaatagtggaagaacttttggtggttctaaacttgtttatttattctccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag

upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 1
TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGATAAGCCTCTTCGCCCTCTCTTCAATGCGGGTTCCCTCTACTACAAGgttcttcctctctctcggtctcttactcttactcttacttcctag----------------------------------------------------------------------------------------------------------------------------------------------------
          ||||||||||||||||||||| | ||||||||||| ||  |  | |||||  ||||     |||||||||  |||||| |||| |||| ||||||| || ||||     |   |     | |||  |      ||                                                                                                                                                    
----------ATGGCGATGGCAATGGCGCTTTGGAGGCTTTCATCGTCCGTCAACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagatggaatagtggaagaacttttggtggttctaaacttgtttatttattttccttttctttcattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag

upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 1
TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGATAAGCCTCTTCGCCCTCTCTTCAATGCGGGTTCCCTCTACTACAAGgttcttcctctctctcggtctcttactcttactcttacttcctag----------------------------------------------------------------------------------------------------------------------------------------------------
          ||||||||||||||||||||| | ||||||||||| ||  |  | |||||  ||||     |||||||||  |||||| |||| |||| ||||||| || ||||     |   |     | |||  |      ||                                                                                                                                                    
----------ATGGCGATGGCAATGGCGCTTTGGAGGCTTTCATCGTCCGTCAACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagatggaatagtggaagaacttttggtggttctaaacttgtttatttattttccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag