1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGCCCGCGTAACTCTGTCTCCTGCATTGCCTCCTTCTTGGGTCGCTTCTCCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACGtgagttcttgtattgttgctattgttgttgtgaatttgtttaagtttatttggggtaaataattataattattattttatttttgctgaaaaggttttcg...
species | Glycine max |
transcript | GLYMA18G25760.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACG CTGCAAAAGATGGGGGCTCTTGATGTGAGCAGAGTGGTTCACAAACACCAAEST: gi|192325246|gb|FK019132.1|FK019132
genomic: CCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACGtgagttcttg ... gttgttcaggCTGCAAAAGATGGGGGCTCTTGATGTGAGCAGAGTGGTTCACAAACACCAA
EST: CCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACG CTGCAAAAGATGGGGGCTCTTGATGTGAGCAGAGTGGTTCACAAACACCAAEST: gi|209715539|gb|BW682192.1|BW682192
genomic: CCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACGtgagttcttg ... gttgttcaggCTGCAAAAGATGGGGGCTCTTGATGTGAGCAGAGTGGTTCACAAACACCAA
EST: CCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACG CTGCAAAAGATGGGGGCTCTTGATGTGAGCAGAGTGGTTCACAAACACCAA
genomic: CCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACGtgagttcttg ... gttgttcaggCTGCAAAAGATGGGGGCTCTTGATGTGAGCAGAGTGGTTCACAAACACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCCGCGTAACTCTGTCTCCTGCATTGCCTCCTTCTTGGGTCGCTTCTCCTTCCAGCCCTTCAAAGAAAACCCCCTCTTGGGCCCTTCTTCGTTGACGtgagttcttgtattgttgctattgttgttgtgaatttgtttaagtttatttggggtaaataattataattattattttatttttgctgaaaaggttttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggggt