Sequence
atgc intronic sequence ATGC exonic sequenceCACCACCAAAGGCTTACAATGGTGGTGGCCATTCTTCCGCCACCACCTTCAATGTGCTAGATTTTGGAGCCAAGGGAGATGGAAAATCTGATGACACCAAggtaaactcttcctgaacctcattacactcactcagcaaatggttttgatgtaccttctgctaacaagtttaacatgcaagaccaagaattttcagttta...
Basic information
species | Glycine max |
transcript | GLYMA18G19670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G19670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G10640.1 (Arabidopsis thaliana), 5'ss of exon 1
CACCACCAAAGGCTTACAATGGTGGTGGCCAT-TCTTCCGCCACCAC----CTTCAATGTGCTAGATTTTGGAGCCAAGGGAGATGGAAAATCTGATGACACCAAggtaaactcttcctgaacctcattacactcactcagcaaatggttttgatgtaccttctgctaacaag-----tttaacatgcaagacc---aagaattttcagttta
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------AAAAGTCCAACCACCGCCTCTTCCGCCTCAAAAGGGATCTCAAGTTTTCAATGTGATGGATTTTGGAGCAAAGGGTGATGGCAAATGTGATGACACTAAGgtacaataaaa--aaagctcattaatttcgttatccgtacagttttca-atcctagtgattaattagagcactttagtatttcgttttcatgagaattttaca----
upper sequence: GLYMA18G19670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G60590.1 (Arabidopsis thaliana), 5'ss of exon 1
CACCACCAAAGGCTTACAATGGTGGTGGCCATTCTTCCGCCACCACC--TTCAATGTGCTAGATTTTGGAGCCAAGGGAGATGGAAAATCTGATGACACCAAggtaaactcttcctgaacctcattacactcactcagcaaatggttttgatgtacct--tctgctaacaagtttaacat-gcaagaccaagaattttcagttta
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-ACCACCAACACCT--CTTCCGCTGCAGCCAGTTGAGGACTCTCAACAATTCAATGTGCTTGATTTTGGAGCTAAGGGTGATGGAATGAGTGATGACACTCAGgtacagact-caaaagattcataat-ccgttacaaaattcaatctagttgttcttgactaatcaagaattttaatctcgctttcatgagaattgtttctaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151413058|gb|EV282866.1|EV282866EST: AATGTGCTAGATTTTGGAGCCAAGGGAGATGGAAAATCTGATGACACCAA GGCATTTCAAGAGGCTTGGGCTGAAGCTTGTAAAATTGAATCATCAACCAT
genomic: AATGTGCTAGATTTTGGAGCCAAGGGAGATGGAAAATCTGATGACACCAAggtaaactct ... atgcaatgcaGGCATTTCAAGAGGCTTGGGCTGAAGCTTGTAAAATTGAATCATCAACCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACCACCAAAGGCTTACAATGGTGGTGGCCATTCTTCCGCCACCACCTTCAATGTGCTAGATTTTGGAGCCAAGGGAGATGGAAAATCTGATGACACCAAggtaaactcttcctgaacctcattacactcactcagcaaatggttttgatgtaccttctgctaacaagtttaacatgcaagaccaagaattttcagttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc