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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTCTCCAGCAATTCCAGCTATGACCAAAACACTGCTTGAGGATGTCAAGAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataaacaagccatactggtcagtgtgttatttttatagttgtagtttcaaaagatcaaggtagaaatgcaaattagcactctgaagggacttag...

Basic information

species Glycine max
transcript GLYMA18G14740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G14740.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0009g03740.t01 (Vitis vinifera), 5'ss of exon 1
CGTTCTCCAGCAATTCCAGCTATGACCAAAACACTGCTTGAGGATGTCAAGAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgta-tatataaacaagccatactggtcagtgtgttatttttatagttgtagt--ttcaaaagatcaaggtagaaatgcaaa--ttagcactctgaagggacttag
||| ||||| ||||||||||  ||||||||   || ||||||||||| |||||||| |||||||| |  ||||||| |||||||||||| || || || |||| |  ||  || | |  |     |   |  |  || || ||  |     |  ||  ||   || |  |     ||  |   || |   | || | | |     
CGTGCTCCACCAATTCCAGCATTGACCAAAGACCTTCTTGAGGATGTTAAGAAGATCTTCAAGACAACTACTGGAACCCCATTTCTCATTCCCACCACAGgtactgcattcactaacagtctgctttcttcagaaatcttaatcatcaggatggtttgaagcttccatttctctgtggcatcctttgatatttgcatgca-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5607077|gb|AI901175.1|AI901175
EST:     GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGNGATC
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120531737|gb|EH259870.1|EH259870
EST:     ATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: ATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|6134794|gb|AW133187.1|AW133187
EST:     GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|9259656|gb|BE347803.1|BE347803
EST:     GAAGATTTTTAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120533482|gb|EH261615.1|EH261615
EST:     TTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: TTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120532136|gb|EH260269.1|EH260269
EST:     GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|19452389|gb|BM953799.1|BM953799
EST:     GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC