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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGCTGGCAAGGATCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGAACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaaccctaataaatagccctttttacttgctctttcgagtttctgcttcattttttcctcgtttgaattatttttgaatgtgaattgaagattggagt...

Basic information

species Glycine max
transcript GLYMA18G10400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g57130.1 (Oryza sativa), 5'ss of exon 1
CGGCGCTGGCAAGGATCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGAACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaaccctaataaatagccctttttacttgctctttcgagtttctgcttcattttttcctcgtttgaattatttttgaatgtgaattgaagattggagt
 || || | |||||| ||||||||||||||||||||||||||||||||||| ||| || |||| || || || || ||||| || ||||| |||||||||||   ||||  |    ||    | |   ||     | |   |      ||    ||||  |  |     |   | | ||  |     ||  |  |   | 
GGGGGCCGCCAAGGACCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGACCTCTGCGACCCCGAGCTGCGGGAGAACGCCCTCCTCGACCTCTCCAAGgtctccccttgtcgcgagaagctatgcgttttctctcctcttcctcaattttcattttttttatcctcctctctctcgatcgatcgctgtgggctccggc

upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g52340.1 (Oryza sativa), 5'ss of exon 2
-CGGCGCTGGCAAGGATCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGAACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaaccctaataaatagccctttttacttgctctttcgagtttctgcttcattttttcctcgtttgaattatttttgaatgtgaattgaagattggagt-
 | || | | |||||||  |||||||||||| ||||||||||| |||||||| ||| || |||| || || || || ||||| || ||||| ||||| |||||  | |        |       ||   | ||     | |  |   ||     |  |   | ||  |||||     ||  ||||     | | || |  | 
GCAGC-CAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCGAAGgtccagcgcgcgttcttctagggttctatagcctaccctatctggggcactggtggtaatttgtg-gaattcacactgcctgtgggggaaggtttcgcctt

upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g37790.1 (Oryza sativa), 5'ss of exon 2
-CGGCGCTGGCAAGGATCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGAACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaaccctaataaatagccctttttacttgctctttcgagtttctgcttcattttttcctcgtttgaattatttttgaatgtgaattgaagattggagt-
 | || | | |||||||  |||||||||||| ||||||||||| |||||||| ||| || |||| || || || || ||||| || ||||| ||||| |||||  | |        |       ||   | ||     | |  |   ||     |  |   | ||  |||||     ||  ||||     | | || |  | 
GCAGC-CAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGgtccagcgcgcgttcttctagggttctatagcctaccctatctggggcactggtggtaatttgtg-gaattcacactgcctgtgggggaaggtttcgcctt

upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 2
CGGCGCTGGCAAGGATCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGAACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta-ataaatagccctttttacttgctctttcgagtttctgcttcattttttcctcg-tttgaattatttttgaatgtgaattgaagattggagt
|   || | ||||||   |||||||||||||||||| ||||| || || |||||| || |||||||||| || || |||||  | || || |||||||||||     | | |    |      |   ||  |    |     |||   | |  |  | ||   | | | | ||   ||||  ||||||||     |||    
CCAGGCAGCCAAGGACAAGAAGATGGCGTCCGCGGAACAGCTGGTCCTGGAACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttccacagctgttatagctcccacccgtggctgatgattttctcatagtggtctctaagatatcagttggatttgtgtgtgaattatctcttgtt--

upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 1
CGGCGCTGGCAAGGATCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGAACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgta-aaccctaataaatagccctttttacttgctctt-tcgagtttctgcttcattttttcctcgtttgaattatttttgaatgtgaattgaagattggagt
    |    |||||| |||||| |||||||||| ||| |  | ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| |||||| || | |  |   ||  |   |  |   | | || |   ||||  | ||  |||| |      ||    ||  ||   || ||  ||||    ||    
TCAGGTCAACAAGGAACGGAAGTTGGCGTCCGCCGAGAATTTGGTGCTCGAACTCAGCAATCCTGAACTTCGTGAAAACGCTCTTCTTGAACTCTCTAAGgtagaatcattctctgtatactcatccaagagttattgttttgttttggtttggttttctttattgttttcgtacgttgatatttgt-ttgattgctgaca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105005|gb|BI892745.1|BI892745
EST:     AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAG                         AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
genomic: AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta ... tgcattttagAAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
EST: gi|4290433|gb|AI438073.1|AI438073
EST:     AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAG                         AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
genomic: AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta ... tgcattttagAAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
EST: gi|20075320|gb|BQ094111.1|BQ094111
EST:     AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAG                         AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
genomic: AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta ... tgcattttagAAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
EST: gi|209707752|gb|BW683644.1|BW683644
EST:     AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAG                         AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
genomic: AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta ... tgcattttagAAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
EST: gi|15816131|gb|BI788406.1|BI788406
EST:     AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAG                         AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
genomic: AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta ... tgcattttagAAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
EST: gi|19053276|gb|BM731943.1|BM731943
EST:     AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAG                         AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
genomic: AACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta ... tgcattttagAAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
EST: gi|23057145|gb|BU577861.1|BU577861
EST:     TTCTCGAACTCTCCAAG                         AAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT
genomic: TTCTCGAACTCTCCAAGgtaaacccta ... tgcattttagAAGAGGGAGCTATTTCAAGATCTTGCTCCGTTGCTATGGAATTCTTTTGGT