1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCCAAAGGGCCAGGGCCAGAATCCGCAAGCACAGATGTTCTCTGATCCGAACATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCAggtattaaaattggagtttgacagtcctctggctttagaaactggatcacgctccttgtacttgtttccaattatcagatgtctcactagcatctacttacgttgtttcgtattttttgaca
species | Glycine max |
transcript | GLYMA18G08370.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AACATGGCCACGGATATGATGAAG-AAAACCTTTCAATGATCATTCCTCA GACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAEST: gi|17518879|gb|BM187921.1|BM187921
genomic: AACATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCAggtattaaaa ... ttttttgacaGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCA
EST: ATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCA GACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAEST: gi|209729539|gb|BW651866.1|BW651866
genomic: ATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCAggtattaaaa ... ttttttgacaGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCA
EST: AAACCTTTCAATGATCA-TCCTCA GACTC-TACTTTTGCTGGGGTG-ACTTTTTCTTTTCTGGA-TTGTAGCA
genomic: AAACCTTTCAATGATCATTCCTCAggtattaaaa ... ttttttgacaGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCAAAGGGCCAGGGCCAGAATCCGCAAGCACAGATGTTCTCTGATCCGAACATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCAggtattaaaattggagtttgacagtcctctggctttagaaactggatcacgctccttgtacttgtttccaattatcagatgtctcactagcatctacttacgttgtttcgtattttttgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA