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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCCTGGCAAGAACTGCAACTGAAAATGGTGACAATACTGATTCCAAGCCACTTCAAAGACACTACCTTGCTGGTTCATATGGATACATGGCTCCTGGtattttattttattttattttttctactaaaattaattgagtgattttctgtagggtaaaatatgttttaggttactcaagaatctacacttggtaaaaa...

Basic information

species Glycine max
transcript GLYMA18G08190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0015g01120.t01 (Vitis vinifera), 5'ss of exon 2
-TTGGCCTGGCAAGAACTGCAACTGAAAATGGTGACAATACTGATTCCAAGCCACTTCAAAGACACTACCTTGCTGGTTCATATGGATACATGGCTCCTGGtatttt----attttattttattttttcta-------ctaaaattaattgagtgattttctgtagggtaa-aatatgttttaggttactcaagaatctacacttggtaaaaa
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TTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300893|gb|FG992953.1|FG992953
EST:     CCGCTTCAAAGACACTACCTTGCTGGTTCATATGGATACATGGCTCCTGT                         TTTGGCATGGTTCTACTTGAGGTTCTCACAGGAAGGCACCCATTAGACCCA
genomic: CCACTTCAAAGACACTACCTTGCTGGTTCATATGGATACATGGCTCCTGGtattttattt ... tgtgtacagtTTTGGCATGGTTCTACTTGAGGTTCTCACAGGAAGGCACCCATTAGACCCA