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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaattattattacaaattgttatgttatgttatgttatgttgttgtgcctttttctcagtgatgctttagtcatttcatttcacttggttatgcatgattgttcgttcatatgttctgtcatggtgagttctaatttgattgatgcatggaacag

Basic information

species Glycine max
transcript GLYMA18G06950.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06950.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 2
TAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaattattattacaaattgttatgttatgttatgttatgttgttgtgcctttttctcagtgatgctttagtcatttcatttcacttggttatgcatgattgttcgttcatatgttctgtcatggtgagttctaatttgattgatgcatggaacag
 ||  || || ||   ||   | ||||||||  | |||||||| || ||| |||| || || |||||||| |||||| | ||||||||||||||||| ||||||  | ||| | |||   ||| ||    | || | || || |   | |||      |   ||  |    | |  |  ||   |  ||||  | | |  |  |                                                        
CAGTGGCTGCCATTTACTCGGACAGCTGGTTGGTTTGGCCACTGTACTGGGCTGCCCAGGGGACAATGTTCTGGGCATTGTTTGTTCTTGGACATGACTGgtaatcacttaattttagccattatttctgtttggt-tgctaagaaatggtggtaaaataaaagaaa---gtaaaactcttacctctactttttcaagtttctt--------------------------------------------------------

upper sequence: GLYMA18G06950.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
TAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaacta-attattattacaaattgttatgttatgttatgttatgttgttgt--gcctttttctcag----tgatgctttagtcatttcatttcacttggttatgcatgattgttcgttcatatgttctgtcatggtgagttctaatttgattgatgcatggaacag--------------------------
     ||||| ||   |||  | || ||| |  | ||||||||||| ||| |||| || || |||||||| ||||| || ||||||||||||||||| ||||||  | ||  |  |||||  || |  |    || |  |  ||| |  |    |         ||     |||     || |  ||   ||||  |  || | | |  ||  ||   | |  |    | |  || ||||| ||  ||||         | |||                             
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataatt---ttactttgcttcttttgttgagtgct--tttggcaatgaacttgaatgtcctttcttgatttttattttttgaag

upper sequence: GLYMA18G06950.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ20170 (Selaginella moellendorffii), 5'ss of exon 1
TAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaattattattacaaattgttatgttatgttatgttatgttgttgtgcctttttc-tcagtgatgctttagtcatttcatttcacttggttatgcatgattgttcgttcatatgttctgtcatggtgagttctaatttgattgatgcatggaacag
  ||||  ||      ||| ||||  ||| || ||||||||||||| ||| |||| |||||||| ||||| ||||| || ||||| || || ||||| |||||| |  || |  |  ||    |  ||||| | || | |   | | ||  || | |||  ||||                                                                                                
CTGCTGGTGCTGCTTACTTGAATAATTGGCTCGTCTGGCCACTCTACTGGGCTGCCCAAGGCACGATGTTCTGGGCTCTCTTTGTGCTCGGCCATGACTGgtaagtttttctc-tccca----gcaatgtt-ttttctttctcgatcttacgcgtctttgatcag------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193557934|gb|FK515817.1|FK515817
EST:     CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|298199350|gb|HO042713.1|HO042713
EST:     CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|23057231|gb|BU577906.1|BU577906
EST:     CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|207793666|gb|GD766734.1|GD766734
EST:     CTGCACAAGGCACAATGGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CTGCACAAGGCACAAT-GTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|208332292|gb|GE129873.1|GE129873
EST:     AGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: AGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|193364160|gb|FK332206.1|FK332206
EST:     CACAATGTTTTGGGCACTTTTTGTTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CACAATGTTTTGGGCACTTTTTG-TTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|208064208|gb|GD864728.1|GD864728
EST:     CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|298163003|gb|HO011736.1|HO011736
EST:     CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
EST: gi|298189099|gb|HO037502.1|HO037502
EST:     CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA
genomic: CCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... catggaacagTGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCA