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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTCTCTCAAGATGGAGAATCGGAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTTGTTGGCTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcatttcgctcattttcttctgggtatgtcttctttttcattgtttctcattgctttttcggttttggcattag

Basic information

species Glycine max
transcript GLYMA18G06770.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
CGTCTCTCTCAAGATGGAGAATCGGAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTTGTTGGCTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcatttcgctcatttt--cttctgggtatgtcttct----ttttcattgtttctcattgctttttcggttttggcattag--------------
||| || ||||| ||||| ||    ||| |   ||| || ||   |||||| || ||||||||| |||||||  | || || |||||||||||||||||||| |   |  |   |    |||  || || |   || | ||  |||| |  |   || ||     |||| ||||  | ||   |   | | | | |    ||||               
CGTTTCACTCAAAATGGAAAACTCTAAGGTTGAAGGAGAGCTCACTCCTCATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtgagcatc-tgtttgatttttgttttatcttcttcgtctttccttccgattcattcatcgggaattttgattgcgtttctccgtcgtcttgttgtca--attaattcttctttaacag

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 1
CGTCTCTCTCAAGATGGAGAATCGGAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTTGTTGGCTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcatttcgctcattttcttctgggtatgtcttctttttcattgtttctcattgctttttcggttttggcattag
 || ||  | || |||||||||   ||||||| ||| || ||  | ||||||||||| ||||| || ||||| || |||||||||||| |||| ||||||||| | |    | |||     || |   |||   ||  || |   || ||   |    |  || | | | | | |||| |   |  | || |       
TGTATCCTTGAAAATGGAGAATTACAAGCTCAAAGGAGAACTCATCCCTCACGTTTACGGCTCCGTCCCTCTCGTCGGCTCTTGGGATTCTTCTAAAGCTgtattctcccgctctatatgcttgtctgtttgtttc--ttgcgattgagttatttgcatggtttaatttgtttgattgttgaatatgattag-------