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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATCTCTCCACCATGGTTCTCTCCAAAACCGCCTCCGAATCCGACGTCTCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgggatttatataattaatcttcatactatatatttttatctattgatgttgtcttgttcttgtcagtttattaatcaattaaggcattgttg...

Basic information

species Glycine max
transcript GLYMA18G04940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595762|gb|DB966205.1|DB966205
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|9899411|gb|BE608379.1|BE608379
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209718158|gb|BW677429.1|BW677429
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209699991|gb|BW652592.1|BW652592
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|213606562|gb|DB959016.1|DB959016
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|213588693|gb|DB957578.1|DB957578
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|7588995|gb|AW704779.1|AW704779
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209722811|gb|BW682884.1|BW682884
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|7588868|gb|AW704654.1|AW704654
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|213599238|gb|DB960006.1|DB960006
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209703624|gb|BW656580.1|BW656580
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|9259742|gb|BE347889.1|BE347889
EST:     TGTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|213614307|gb|DB956835.1|DB956835
EST:     CCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209727302|gb|BW663221.1|BW663221
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209728381|gb|BW652038.1|BW652038
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|15203394|gb|BI426162.1|BI426162
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|213597758|gb|DB960315.1|DB960315
EST:     TC--TCCACTCAACCTTCGCTTCTCGCTGTGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209702090|gb|BW652330.1|BW652330
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209716269|gb|BW657572.1|BW657572
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCGGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|209704261|gb|BW683489.1|BW683489
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|5058355|gb|AI736831.1|AI736831
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|23732463|gb|BU764391.1|BU764391
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|213589811|gb|DB959422.1|DB959422
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
EST: gi|9820626|gb|BE556136.1|BE556136
EST:     TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAG                         GTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT
genomic: TCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGgtatgcatgg ... atattgatagGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCAT