Sequence
atgc intronic sequence ATGC exonic sequenceATGAAGCTCGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCCGTTGAATTGGGGATGCGGAATGtgcgtttttcttttcccctccttttaaattccaattttattattattattattattttctgaattcttgagctgaaattaatgagattcctccctctgttgcagc
Basic information
species | Glycine max |
transcript | GLYMA18G04910.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 2
----------------ATGAAGCTCGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCCGTTGAATTGGGGATGCGGAATGt--gcgtttttcttt------tcccctccttttaaattccaattttattatta------ttattattattttctgaattcttgagctgaaattaatgagattcctccctctgttgcagc
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CACTGCGGCGTAAAGGATGAAGCTTGACGTGAATGTGTTGAGATATTTATCCAAAGATGATTTTCGAGTTCTCACTGCTGTCGAGATGGGAATGCGAAACgtcagtgctcctctctaatcgcttttttttttttaaattctggaattgacatttagggttttaaccttttgttttactttttttttctgaaaatcctctgattttttggttt-ttgcag-
upper sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 1
-ATGAAGCTCGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCCGTTGAATTGGGGATGCGGAATGtgcgtttttcttttcccc-tccttttaaattccaattttattattattattattattttctgaattcttgagctgaaattaatgagattcctcc--ctctgttgcagc--------
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AATGAAGTTGGACGTGGACGTCTTGCGATACCTTTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAAATGGGAATGAGGAATgtatgtgcaaatttgagcgattcttttgaat----attatcatttttttatttctttattttgaatatttga--taaagataaagagggtctgacatctccatctccacgctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298168888|gb|HO009818.1|HO009818EST: CAAAGATGATTTTAGGGTTCTCACAGCCGTTGAATTGGGGATGCGGAATC ATGAAATCGTACCCACCGAACTCATCGACCGAATTGCGCGTCTCAAG
genomic: CAAAGATGATTTTAGGGTTCTCACTGCCGTTGAATTGGGGATGCGGAATGtgcgtttttc ... ctgttgcagcATGAAATCGTACCCACCGAACTCATCGACCGAATTGCGCGTCTCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAAGCTCGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCCGTTGAATTGGGGATGCGGAATGtgcgtttttcttttcccctccttttaaattccaattttattattattattattattttctgaattcttgagctgaaattaatgagattcctccctctgttgcagc
- - - - - - - - - - - - - - - - - - AAGATG