Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCACTCTCAGAGTGGTCTCAATGTCTTCCGTTCCTCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatcttttattctctcacctttttacgcttcttttttttgtttcttcggtgaaaattagaatcactattacattaagggattaatgatgtgcatg...

Basic information

species Glycine max
transcript GLYMA18G04510.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588679|gb|DB957687.1|DB957687
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|23064418|gb|BU579191.1|BU579191
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|192322908|gb|FK014839.1|FK014839
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACGGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|298177053|gb|HO023414.1|HO023414
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|13480266|gb|BG509609.1|BG509609
EST:     ACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: ACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|151410703|gb|EV280518.1|EV280518
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|23726127|gb|BU761045.1|BU761045
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|209721279|gb|BW665773.1|BW665773
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|298194148|gb|HO040796.1|HO040796
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|9259381|gb|BE347528.1|BE347528
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|298199108|gb|HO042471.1|HO042471
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|117557695|gb|EG702080.1|EG702080
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|15203082|gb|BI425850.1|BI425850
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|15285066|gb|BI468957.1|BI468957
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|17963072|gb|BM269825.1|BM269825
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|151395906|gb|EV265783.1|EV265783
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|298168940|gb|HO009870.1|HO009870
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|10844642|gb|BF067841.1|BF067841
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|7796708|gb|AW782102.1|AW782102
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
EST: gi|6482888|gb|AW202098.1|AW202098
EST:     TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGAC                         TGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT
genomic: TCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatct ... tgtctttttaGGCCCTTTTTGCCAAAGGGTGCTGCTGACACTGGAGGAAAAACATCTACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCACTCTCAGAGTGGTCTCAATGTCTTCCGTTCCTCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACtgtaatatcttttattctctcacctttttacgcttcttttttttgtttcttcggtgaaaattagaatcactattacattaagggattaatgatgtgcatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac