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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGGAGTTGGCTGGCTCAACGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaattaatcactctcttccgattctcaattttctcagcctcgctgtattggctttcggttcccatttcgttttctttttcttctcttttttctcccaattttcaagg

Basic information

species Glycine max
transcript GLYMA18G04360.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401899|gb|EV271712.1|EV271712
EST:     CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
EST: gi|192332257|gb|FK023906.1|FK023906
EST:     CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
EST: gi|298186757|gb|HO037390.1|HO037390
EST:     CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
EST: gi|213600856|gb|DB958434.1|DB958434
EST:     CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
EST: gi|7684914|gb|AW755562.1|AW755562
EST:     CACAAAGGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
EST: gi|27423806|gb|CA935326.1|CA935326
EST:     CTCCGCTCTCACTCAACTTCAGA-TTTCCCCACAAACGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
EST: gi|298188142|gb|HO032099.1|HO032099
EST:     CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
EST: gi|213588703|gb|DB957697.1|DB957697
EST:     CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGG                         GCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT
genomic: CTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGtaaatcaatt ... attttcaaggGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCT