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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcacgatgtaattgagaaactgtttagtttgtctatgttggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag

Basic information

species Glycine max
transcript GLYMA18G03610.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03610.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G55660.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcacgatgtaattgagaaactgtttagtttgtctatgttggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag
|||||  | || || ||||||||||||||||| ||||| ||||||||  |||| |||||  |||||||||| || |||||||||||||| ||||| |  ||||    || | | | | ||   |  || |  | |     | |  |||| |   |  ||   || |   | |      | | |||||  |  ||||                                                                   
GAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGTCTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCTATGgta---gttttatttcgaagttccatactttagtttgatgtttctttgatatcttactttacttatgagtctaacttttgatttcaatgtgatgaaag-----------------------------------------------------------------

upper sequence: GLYMA18G03610.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcac-gatgtaattgag--aaactgtttagtttgtctatgttggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || || || ||||| || ||||| || ||||| || ||||| || |||| |  ||       |  |   ||  | |  | |     |  |  ||||   ||| |||| | ||||  | | |   |  ||||                                                                                 
GAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGgtaagtcttaaaaaaagacgaagctatcttgtgtttgttaaaatgcttgaaccaaagtgttgaatttga-tgtttcttcttttag---------------------------------------------------------------------------------

upper sequence: GLYMA18G03610.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcacgatgtaattgagaaactgtttagtttgtctatgt--tggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag
||||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| || ||||| || || ||||| |||||| || |||||||||  ||  |   | | | |  |  |  | |||||   |  || |||  |||| || | |  | ||||||  ||  |  |||  | | |||  |      | ||                                                 
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattctaaggctttgtttttcagt-taatt---agtcttttttttttggctttttaattgcaattcatttca--tttccattattccatgtcatctatag------------------------------------------------

upper sequence: GLYMA18G03610.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S58_274V6.1 (Physcomitrella patens), 5'ss of exon 3
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcacgatgtaattgagaaactgtttagtttgtctatgttggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag
||||||||||||||| | ||||||||||||||||||||||||   || |||||||||||||| || ||||| || || ||||| || || ||| |||  |||            |   ||  | |  | ||   |  | ||         | | |||||  |||    ||||||  |   ||    | |||| |  || |   |  |  | |  |  ||    || | |                                  
GAGAGGTTTGCAAAACTATTGCTTGGTGAAGATATGTCAGGTGGGGGCAAAGGGGTTTGCACAGCGTTGGCTATATCGAATGCAATCACAAATTTGTCAGgtgaaaa-------tcaaagctattaccgtaa--tggcaat---------agattgtttgtttt---catgttgaaagcaagaatga-ttttcgcgttgtaaatattaatgtccagatttttgttcacag---------------------------------