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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGTTCACGAGAACAGGAATGGCACCTATCAGTGGATTGTCAAACCCAAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGGgttagccttcacatcaacgtcatttttttatatatatatattattcgaaatcaagacgctttttttattttaattttttatcctgatttgtttaattggttgattaattatcag

Basic information

species Glycine max
transcript GLYMA18G02210.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 1
AACTTGTTCACGAGAACAGGAATGGCACCTATCAGTGGATTGTCAAACCCAAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGGgttagccttcacatcaacgtcatttttttatatatatatattattcgaaatcaagacgctttttttattttaattttttatcctgatttgtttaattggttgattaattatcag
| |||||||| |||||||||||||||||||| || ||| ||||||| |||||  ||||||| ||  |||| |  ||| |  ||||||| || ||  | ||||| || |    | ||||    ||| |||  | || |   || ||     || |     | |||     || |||| |  |  ||| | |                        
AGCTTGTTCATGAGAACAGGAATGGCACCTACCAATGGGTTGTCAAGCCCAAGACCGTCAAATATGAATTCAGGACCGATGCCCATGTCCCCAAGCTAGGgttggcatct-taacaactgtgtttctttcca-attttcctttttgattttcca-----tgtttccgaattgatttctgtttttgactag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208149678|gb|GD947682.1|GD947682
EST:     AAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGG                         GGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCG
genomic: AAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGGgttagccttc ... taattatcagGGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCG
EST: gi|9986214|gb|BE660322.1|BE660322
EST:     AAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGG                         GGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCGGTGG
genomic: AAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGGgttagccttc ... taattatcagGGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCGGTGG
EST: gi|27427007|gb|CA938527.1|CA938527
EST:     AAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGG                         GGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCGGTGG
genomic: AAATCCGTCAACTACCAATTTAAAACCAACACCCATGTTCCAAAATTGGGgttagccttc ... taattatcagGGTGATGCTTGTGGGTTGGGGTGGAAACAACGGCTCTACCCTCACCGGTGG