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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACATTAATTATCAGgtctttattttattcttaccgatctctctttttttttctcgtaattttttgttatcatccgaagatttcctttgatcgattatcaatttgactaattcca...

Basic information

species Glycine max
transcript GLYMA18G02040.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G22290.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACATTAATTATCAGgtctttattttattcttaccgatctctctttttttttctcgtaattttttgttatcatccgaagatttcctttgat-cgattatcaatttgactaattcca
  | || ||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||  |  || |||||      |  |  |  | ||||   ||| ||| | | |  |   | |||| | | |        |    ||| |     ||    ||   |  ||     
ATTAGCGAAATATAAACTGGTGTTCTTAGGAGATCAATCTGTCGGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGgttaaatctaaaaccacatcgatgattctgtttctctgtttttgctgtttgattttaattctgtctcatttttaacgtttttgatcatcgaaacaacatt-

upper sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G39890.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACATTAATTATCAGgtctttattttattcttaccgatctctctttttttttctcgtaattttttgttatcatccgaagatttcctttgatcg-attatcaatttgactaattcca
| | || || |  || || || |||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||  |  || ||||| ||||      |       |  | | || ||| |||   ||| || || |   |  |   |  |||| |||| |    || |    |||  | ||    
TTTGGCAAAGTTTAAACTGGTGTTCTTAGGAGACCAATCTGTCGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCACGTACCAGgtatttacacagattcctttcacttgttttgtttattcatttaaattcttctctgcgacaacaagtttcttttgttttcgtttttttattgtttgatctg-

upper sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACATTAATTATCAGgtct--ttattttattcttaccgatctctctttttttttctcgtaattttttgt---tatcatccgaagat---ttcctttgatcgatt-atcaatttgactaattcca----------------------------------------------------------------
  | || || ||||||||||| ||| | || |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| |  | |||||||||    | ||||| ||||  || |||||  |     ||  |  | ||   ||||   |   ||||         || || | ||  ||  ||||  || |  | | | |                                                                
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag

upper sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S288_43V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACATTAATTATCAGgtctttattttattcttaccgatctctctttttttttctcgtaattttttgttatcatccgaagatttcctttgatcgattatcaat---ttgactaattcca
 ||  | || |||||| | || ||  | || |||||    |||||||| || |||||||| ||||| |||||||||||||| || |||   |  || |||||  | | |  |     |    ||||||| | | |  ||||     |    |  ||   |     | |    |  |   || |   |   ||||  | |||  
GCTTTCGAAGTACAAGTTGGTCTTTCTTGGTGATCAGAGCGTCGGCAAGACTAGCATCATTACTCGATTCATGTATGACAAGTTTGACCAGACGTACCAGgtaatgaatc-acaacaaattctctctctctctctcgctcgctcgctcggttgctcgctctcctgtctttcgttgttccttgtgggtggattgaaaagttc--