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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAAAGCGAATAACTGCTAATTATGCCCTAGTTTGCTTCTTCCCTTAGCCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttaccaacaccaaacaatgcttctcagtttttttcctctgaacttcgtttttagttctcataacgctgttccgttttctcttttctcag

Basic information

species Glycine max
transcript GLYMA18G01110.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318954|gb|FK009034.1|FK009034
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|193441154|gb|FK409975.1|FK409975
EST:     TTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: TTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|151411461|gb|EV281272.1|EV281272
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|15815139|gb|BI787414.1|BI787414
EST:     GCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|120529639|gb|EH257773.1|EH257773
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192330707|gb|FK022320.1|FK022320
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192297172|gb|FG988268.1|FG988268
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|14126219|gb|BG790657.1|BG790657
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|21888291|gb|BQ741504.1|BQ741504
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209706839|gb|BW653131.1|BW653131
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|16282501|gb|BI945051.1|BI945051
EST:     ATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: ATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|151394964|gb|EV264835.1|EV264835
EST:     CCGTTGCCCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|17021507|gb|BM092541.1|BM092541
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|298172778|gb|HO020332.1|HO020332
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|12772612|gb|BG237466.1|BG237466
EST:     GTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209706840|gb|BW653132.1|BW653132
EST:     ATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: ATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|13788209|gb|BG650801.1|BG650801
EST:     CGTTGCTCTGCTTCAACATTGCCGAAGCAGAAGAATCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192298114|gb|FG991394.1|FG991394
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|9258634|gb|BE346781.1|BE346781
EST:     CGTTGCTCTGCTTC-TTTTTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|14259571|gb|BG882479.1|BG882479
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192322932|gb|FK016663.1|FK016663
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|9901461|gb|BE610429.1|BE610429
EST:     CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|13181069|gb|BG352409.1|BG352409
EST:     CCGTTGCTCTGCTTCAACATTTCGGAAGCAGAAGAAGCGCCGCAGCTGTG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|37994771|gb|CF806360.1|CF806360
EST:     GCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|6725501|gb|AW309900.1|AW309900
EST:     GCGGAAGCAGAAGAAGCGCCGCAGCTATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATAAAGCGAATAACTGCTAATTATGCCCTAGTTTGCTTCTTCCCTTAGCCGTTGCTCTGCTTCAACATTGCGGAAGCAGAAGAAGCGCCGCAGCTATGgtaggttaccaacaccaaacaatgcttctcagtttttttcctctgaacttcgtttttagttctcataacgctgttccgttttctcttttctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT