Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCATCATCTCTTTGAGTTGCCATTGAAGAAGAAGCTCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcag

Basic information

species Glycine max
transcript GLYMA17G37730.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196591|gb|HO041334.1|HO041334
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|120494113|gb|EH222280.1|EH222280
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298194266|gb|HO040914.1|HO040914
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|151412034|gb|EV281845.1|EV281845
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|16345364|gb|BI970959.1|BI970959
EST:     CGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCNGTCTTGCCAAA
genomic: CGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|12773864|gb|BG238791.1|BG238791
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298170230|gb|HO018854.1|HO018854
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCTATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298167144|gb|HO010583.1|HO010583
EST:     TCAGATCGGAAAAATTCACCTCTCCAGTCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|38193189|gb|CF922395.1|CF922395
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|8283304|gb|BE020865.1|BE020865
EST:     CGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: CGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|6666885|gb|AW278344.1|AW278344
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|7795478|gb|AW780875.1|AW780875
EST:     GAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: GAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|15200385|gb|BI424322.1|BI424322
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|17519104|gb|BM188146.1|BM188146
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|193460745|gb|FK427514.1|FK427514
EST:     CAGATACGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: CAGAT-CGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|4285580|gb|AI440924.1|AI440924
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|20448913|gb|BQ253037.1|BQ253037
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|17153474|gb|BM143407.1|BM143407
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|192322713|gb|FK014404.1|FK014404
EST:     TCAGATCGGAAAAATTCACCTCTCCAACCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|151412841|gb|EV282653.1|EV282653
EST:     TCAGATCGGAAGAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|10236137|gb|BE804955.1|BE804955
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|209699340|gb|BW664059.1|BW664059
EST:     CCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: CCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|192297663|gb|FG989582.1|FG989582
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|26269345|gb|CA820408.1|CA820408
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298169760|gb|HO021120.1|HO021120
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298187150|gb|HO034299.1|HO034299
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|31462386|gb|CD404414.1|CD404414
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCTGTGTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA