1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACGGATGCTGCTGAAGACGCTACACGCCGCCGTAATGCGGTGGCCGAGTACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCggttcgttccttcctttgtcatgctaatagcaactacaattcgctcttgtttttcattccgagtactttttcttattatcattccgatttattagggttttgtttttgaatttttacgagtttgcctttgaaccgctaattgca
species | Glycine max |
transcript | GLYMA17G37220.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCC GTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGATEST: gi|207693769|gb|GD676324.1|GD676324
genomic: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCggttcgttcc ... gctaattgcaGTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGAT
EST: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCC GTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAAEST: gi|298188174|gb|HO034867.1|HO034867
genomic: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCggttcgttcc ... gctaattgcaGTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAA
EST: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCC GTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGATEST: gi|16281445|gb|BI944491.1|BI944491
genomic: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCggttcgttcc ... gctaattgcaGTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGAT
EST: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCC GTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGAT
genomic: ACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCggttcgttcc ... gctaattgcaGTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGGATGCTGCTGAAGACGCTACACGCCGCCGTAATGCGGTGGCCGAGTACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCggttcgttccttcctttgtcatgctaatagcaactacaattcgctcttgtttttcattccgagtactttttcttattatcattccgatttattagggttttgtttttgaatttttacgagtttgcctttgaaccgctaattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG