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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGATCCCTCGCGTTCTCTGCGATCCTTCTCTCGCTCTTCATCCATGGCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctccatttccatttccatttccatttcacgcgaatgtgttttcttagattttccgttctttaaattttctcgtttattttctccttaatcgctcg...

Basic information

species Glycine max
transcript GLYMA17G34020.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34020.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 5'ss of exon 1
TTGGAGATCCCTCGCGTTCTCTGCGATCC---TTCTCTCGCTCTTCATCCATGGCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctccatttccatttccat--ttccatttcacgcgaatgtgttttcttagattt-tccgttctttaaattttctcgtttattttctccttaatcgctcg---
   | ||||  |||  |||  ||  |      ||||    ||  | ||||| | | | | ||||||||||||||||||||||  ||| |||||||| ||||||||  | ||| |  |  ||||| |  |||| |||        ||| |||| || ||| | |  |   ||||  ||   ||       ||    ||     ||     
---GCGATCTATCGTCTTCCTTGGCACTGCGATTCTTCTCCTTCTGATCCACGCCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAGgtcagttccctccctctttccgtgtttccgttttg------tgttttttgttggatctgtgtgaattttatgttagatctcgcgggttgcgtttggcttctgagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213620512|gb|DB959212.1|DB959212
EST:     GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG                         GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: gi|213598705|gb|DB964271.1|DB964271
EST:     GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG                         GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: gi|12773257|gb|BG238184.1|BG238184
EST:     GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG                         GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: gi|213599111|gb|DB962218.1|DB962218
EST:     GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG                         GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: gi|209718610|gb|BW674736.1|BW674736
EST:     GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG                         GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG