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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGACAGTTGTCGAGACTAAACAACAAATTGAATCCCGTAATCCAATTGCATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATGgtataagattcctgtatcttatttttgttcattttttcagtttcagaaatgaattgatagttttatgttccttttgcag

Basic information

species Glycine max
transcript GLYMA17G31400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G31400.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S291_71V6.1 (Physcomitrella patens), 5'ss of exon 7
AGAGACAGTTGTCGAGACTAAACAACAAATTGAATCCCGTAATCCAATTGCATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATGgta----taagattcctgtatcttatttttg---ttcattttttcagtttcagaaatgaattgatagtttt--atgttccttttgcag-----------------------------
 ||||||||  |  | ||||  |||||||||||||||||||||||  | |||||||| ||||| |||||||||  | |         | |    | |  ||||     ||   |     || |||  ||     ||||   |  || | | |   ||  ||| || |  ||  | | |      ||||                             
TGAGACAGTCATTAACACTAGGCAACAAATTGAATCCCGTAATCCTTTAGCATTTGCCCCCAAAATTGTTCAGGGTGCGGAACCCTCTCCAGTGCCTGGGgtaagttcaaacctagcacattttaccttacaatttcaggatgccaatcttatgcat--attcatggccttccaagctttgcccgcagctgaggcatgcgtccaactggttgtgcag

upper sequence: GLYMA17G31400.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S193_30V6.1 (Physcomitrella patens), 5'ss of exon 4
AGAGACAGTTGTCGAGACTAAACAACAAATTGAATCCCGTAATCCAATTGCATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATGgtataagattc--ctgtatcttatttttgttc-attttttcagtttcagaaatga----attgatagttttatgttccttttgcag-------------------------
|| ||||||  |  | || | ||||||||||||||| || || ||| | ||||||||||| |||||||||||| || |     ||  |    ||    |||  ||||  |   |   | |  | || | | | |    |    | |||   ||||     ||||||    | ||  | || |                             
AGCGACAGTCTTGAACACCAGACAACAAATTGAATCACGCAACCCATTAGCATTTGCTCCGAAGATTGTTCAGGCTCCTG--AATCCTCTCCCATCCCTGGGgtaagtgtaaacaaaacccaagttgtctcctaacggtgggatatcaactatgatcttgttgataagcatgtgagcgttcttttaaatgtattgtgtactggttgcgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21995121|gb|BQ786649.1|BQ786649
EST:     CATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATG                         GATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGC
genomic: CATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATGgtataagatt ... ccttttgcagGATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGC