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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTCTTCCATTTCTTAACCTTCTTCTCCTATTTCGTCGTTCGCAGCTCCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcttttgcagattgcttactttacttacttgttccctctttcgtag

Basic information

species Glycine max
transcript GLYMA17G26900.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G26900.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g03260.t01 (Vitis vinifera), 5'ss of exon 1
CTACCTCTTCCATTTCTTAACCTTCTTCTCCTATTTCGTCGTTCGCAGCTCCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcttttgcagattgcttactttacttacttgttccctctttcgtag
|||||||||||||||| || | |||||||| || ||||||||||| ||||| ||| ||||| |  |  | || ||  |    || |  ||  ||| ||||||||  | ||||||||         || |  | |   ||  |      ||||   | |    ||  ||   | |   |||     | ||| |   | | | | |  |  ||||| ||                                    
CTACCTCTTCCATTTCCTAGCTTTCTTCTCATACTTCGTCGTTCGTAGCTCTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGCgtaag-cactctctctactcgcaaatcgccattttattcgtttctccgatattcttttggcaattaatggtttttagtat-----tctatttgatttttttttttgaatttttgtag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401073|gb|EV270887.1|EV270887
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|14259240|gb|BG882148.1|BG882148
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|151412705|gb|EV282517.1|EV282517
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|16105581|gb|BI893321.1|BI893321
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GATTTATTAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|298190184|gb|HO032305.1|HO032305
EST:     CCGCAACCCAAAACTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|254342909|gb|GR859071.1|GR859071
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|23064041|gb|BU578814.1|BU578814
EST:     CCTCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|5753671|gb|AI960958.1|AI960958
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAA
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|26057377|gb|CA800291.1|CA800291
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCAT
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCAT
EST: gi|11687742|gb|BF595418.1|BF595418
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|298179735|gb|HO024950.1|HO024950
EST:     CCGCAACCCAAAACTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|298197455|gb|HO044934.1|HO044934
EST:     CCGCAACCCAAAACTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|151402880|gb|EV272693.1|EV272693
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|27424702|gb|CA936222.1|CA936222
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|6482381|gb|AW201644.1|AW201644
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|11412862|gb|BF424873.1|BF424873
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|33390191|gb|CA853398.1|CA853398
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG