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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACTCTCTTAAGGTCAGAGCGGTGGCTATGTTTGAAGCTGTACAGGAGATTGCCATATACATTCATAGGTTTCACAATCTTGACCTTTTTCAGCAGGGgtatacaccaatctctattttctttccagtttttgttatgaagtttccttggttacctaattgacatgcatattttgggttatgcag

Basic information

species Glycine max
transcript GLYMA17G26570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G26570.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G09980.2 (Arabidopsis thaliana), 5'ss of exon 2
CACACTCTCTTAAGGTCAGAGCGGTGGCTATGTTTGAAGCTGTACAGGAGATTGCCATATACATTCATAGGTTTCACAATCTTGACCTTTTTCAGCAGGGgtatacaccaatctctattttctttccagttt---ttgttatgaagtttccttggttacctaa----ttgaca-----tgcatattttgggttatgcag
|  ||      | ||| |   | |||   ||| | ||  |||| ||||||||||| || || || ||||||||||| || ||||| ||||| ||||| ||||||       ||||||| |    | | |  |   |||     | |||  |||  |   ||||    |||  |     || || ||||   |  |  ||
CTTACGTAGCCAGGGTTAAGCCAGTGCTAATGATCGACACTGTTCAGGAGATTGCTATCTATATCCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGgtatgatagtttctctatatctagttctgagtgaattgaagcaatgttctcttcttgttctaaagagttgttacttgttgtatcttttaattcttttag

upper sequence: GLYMA17G26570.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G58350.3 (Arabidopsis thaliana), 5'ss of exon 2
CACACTCTCTTAAGGTCAGAGCGGTGGCTATGTTTGAAGCTGTACAGGAGATTGCCATATACATTCATAGGTTTCACAATCTTGACCTTTTTCAGCAGGGgtatacacca-atctctattttctttccagtttttgttatgaagtttccttggttacctaattgacatgcatattttgggttatgcag
|  ||      ||||| |   | ||    ||| ||||  | || || |||||||| || || |||||||||||||| || ||||| ||||| ||||| ||||||  | || || | ||| |   |     ||| |  |   |  ||   |||    | |   ||||     | ||||   ||   |||
CTTACATATCCAAGGTTAAGCCAGTACTGATGGTTGACACGGTTCAAGAGATTGCGATTTATATTCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGgtatggaacatatttttatatatatatatctttatacttcaacattgttttgaaagctt--ctgac-----tcttttaacttcatcag