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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTATGAAGAAGAGTCGCCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATGgttagtacttaattcccttccattacatgaaaatgtaatagatgtgttcgggagagaatacttcatcttgtatgcacaaggacatgccaaccaataagatggttattaaaaaaaatgtgttttttttttcttctcatctcgacaatcaaaacttgatttttttttgttcaatttgtgttgcag

Basic information

species Glycine max
transcript GLYMA17G18640.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494213|gb|EH222380.1|EH222380
EST:     AGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATG                         GGATTGTGGAAAACAAGTGTATCTAG
genomic: AGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATGgttagtactt ... tgtgttgcagGGATTGTGGAAAACAAGTGTATCTAG
EST: gi|208336300|gb|GE138694.1|GE138694
EST:     AGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATG                         GGATTGTGGAAAACAAGTGTATCTAG
genomic: AGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATGgttagtactt ... tgtgttgcagGGATTGTGGAAAACAAGTGTATCTAG
EST: gi|208054805|gb|GD852794.1|GD852794
EST:     CGGGTCGCTGGGAGTCTCATATATG                         GGATTGTGGAAAACAAGTGTATCTAG
genomic: CGGGTCGCTGGGAGTCTCATATATGgttagtactt ... tgtgttgcagGGATTGTGGAAAACAAGTGTATCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCTATGAAGAAGAGTCGCCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATGgttagtacttaattcccttccattacatgaaaatgtaatagatgtgttcgggagagaatacttcatcttgtatgcacaaggacatgccaaccaataagatggttattaaaaaaaatgtgttttttttttcttctcatctcgacaatcaaaacttgatttttttttgttcaatttgtgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC