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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGACCGCGATTCTCAACGCCGACGACCCTATACTCCCCATCGCCGCCTCCGACGAGTTTCGCCCCTTCGTTCGCCGCCTCCCCGAGTTCAAGTTCTGgtatgctattttgctaccttcttatacctagttttttttcttctcggattttattagagttgctccaattcagaatccattttgattaatttatttttta...

Basic information

species Glycine max
transcript GLYMA17G18430.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G18430.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 1
---CCGAGACCGCGATTCTCAACGCCGACGACCCTATACTCCCCATCGCCGCCTCCGACGAGTTTCGCCCCTTCGTTCGCCGCCTCCCCGAGTTCAAGTTCTGgtatgctattttgctaccttcttatacctagttttttttcttctcggattttattagagttgctccaattcag---aatccattttgattaatttatttttta
   | |||| |      |||   |  ||||  || |  || || |     |  || ||||| || || || ||||| ||||||||||| ||||||||||||||||  |  |  |   ||  ||  |   | | ||||      |||| || ||    |    | |    ||||  |    ||  ||    ||||    |||     
ACCCGGAGATCCAAGAACTC---GTTGACGGACCCACGCTTCCGACTCGGGGATCTGACGAATTCCGGCCGTTCGTGCGCCGCCTCCCGGAGTTCAAGTTCTGgtgcgtcaact-attatattact-cgcattgtttgaccatttctagggttcccctttt-tcgtcttaatttggcctgatttatacatattatcacattgaacg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933831|gb|BU550970.1|BU550970
EST:     TCCGACGAGTTTCGCCCCTTCGTTCGCCGCCTCCCCGAGTTCAAGTTCTG                         TTTCCTGTGTGAACAGGTACTCAATCACGAAGGCATTTTGCATTGCATTTG
genomic: TCCGACGAGTTTCGCCCCTTCGTTCGCCGCCTCCCCGAGTTCAAGTTCTGgtatgctatt ... gctgcttaagTTTCCTGTGTGAACAGGTACTCAATCACGAAGGCATTTTGCATTGCATTTG