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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTTCATACGATGATTTGAAGCATGATATCCAACGCATTGCTAATGGTGACCGCTCTCCTATCCTATGCGCTCATCCAATTTCCGAGTTTCTCACCAGgtacgttttttttctttcttttttttttttttttgcattacacagtcgtaaaatgtatttaataatgaccaatttaaattggagtaagcgagcaattttt...

Basic information

species Glycine max
transcript GLYMA17G18080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G18080.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ23432 (Selaginella moellendorffii), 5'ss of exon 1
TCGTTTCATACGATGATTTGAAGCATGATATCCAACGCATTGCTAATGGTGACCGCTCTCCTATCCTATGCGCTCATCCAATTTCCGAGTTTCTCACCAGgtacgtttt---ttttctttcttttttttttttttttgcattacacagtcgtaaaatgtat-ttaataatgaccaatttaaattggagtaagcgagcaattttt
|| |  | ||||| ||  |  |||  || |||||||||||||| ||||| |||  ||| || ||||| | ||| ||||| || |||||||| ||||||||||| |       || ||  || || |||   |||      ||   |  | |  |  |  || ||  || | || |||||   |      |              
TCATCACCTACGAGGACCTCGAGCCCGAGATCCAACGCATTGCCAATGGCGACACCTCGCCCATCCTCTCCGCCCATCCCATCTCCGAGTTCCTCACCAGgtaagaaagaaattctcgatccttctttccatttgcgatgttgggcgatggcgatctcgatgttggtactcac-aattttgctcctcccag-------------

upper sequence: GLYMA17G18080.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ25415 (Selaginella moellendorffii), 5'ss of exon 1
TCGTTTCATACGATGATTTGAAGCATGATATCCAACGCATTGCTAATGGTGACCGCTCTCCTATCCTATGCGCTCATCCAATTTCCGAGTTTCTCACCAGgtacgtttt---ttttctttcttttttttttttttttgcattacacagtcgtaaaatgtat-ttaataatgaccaatttaaattggagtaagcgagcaattttt
|| |  | ||||| ||  |  |||  || |||||||||||||| ||||| |||  ||| || ||||| | ||| ||||| || |||||||| ||||||||||| |       || ||  || || |||   |||      ||   |  | |  |  |  || ||  || | || |||||   |      |              
TCATCACCTACGAGGACCTCGAGCCCGAGATCCAACGCATTGCCAATGGCGACACCTCGCCCATCCTCTCCGCCCATCCCATCTCCGAGTTCCTCACCAGgtaagaaagaaattctcgatccttctttccatttgcgatgttgggcgatggcgatctcgatgttggtactcac-aattttgctcctctcag-------------