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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCATACTTTCTAGGATGGCAGGAATACGAGAAAAACCCTTATGATGAGGTCCATAATCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGgtaattaattaaacttacacattcatttttctcacaaccccaatcttctacaacgtataaccttataaaaaactttatacaagtattgtgtaacattttgagtcaataaaaataataatctttttggaacattgcag

Basic information

species Glycine max
transcript GLYMA17G16990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16990.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G37770.1 (Arabidopsis thaliana), 5'ss of exon 1
TTCTTCATACTTTCTAGGATGGCAGGAATACGAGAAAAACCCTTATGATGAGGTCCATAATCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGgtaattaattaaacttacacattcatttttctcacaaccccaat---cttctacaacgtataacctta--taaaaaactttatacaagtattgtgtaacattttgagtcaataaaaataataatctttttggaacattgcag
|||||| || |||   || ||| | || || || ||||| ||||| || ||| || | || ||  | || ||||||||||||||||| ||||| |||||||||||| |||| ||| |  |||  |       |  |      ||    ||| |  | |||| |  | |  || || |  |||      || |   | | || |||                                     
TTCTTCGTATTTTTGGGGTTGGGAAGAGTATGAAAAAAATCCTTACGACGAGATCAAGAACCCAGACGGCATTATCCAAATGGGTCTAGCAGAAAATCAGgtaattcattacactaat-catcaaaacgcaacgtactttagataagtttcgatcatgtatgatataaagtataatatcttacgttcttacttgtttatatcttgcag----------------------------------

upper sequence: GLYMA17G16990.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0840g00010.t01 (Vitis vinifera), 5'ss of exon 1
TTCTTCATACTTTCTAGGATGGCAGGAATACGAGAAAAACCCTTATGATGAGGTCCATAATCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGgtaattaattaaacttacacattcatttttctcacaaccccaatcttctacaacgtataaccttataaaaaactttatacaagtattgtgtaacattttgagtcaataaaaataataatctttttggaacattgcag
|||   ||| || || |||||| ||||||||||||||||| | ||| | |||||| | || || |  || ||||| || |||||||| |||||||||||||| |  |  |           ||   ||||   | |||  |||||||     |  | |  ||  | |   |      ||     ||  | |  | |  ||                                     
TTCAGAATATTTCCTGGGATGGGAGGAATACGAGAAAAACGCATATCACGAGGTCGAGAACCCGAGTGGAATTATTCAGATGGGTCTGGCAGAGAATCAGgttagaagat-----------tttccttttaaaaaaactacaatcttt---gatttcttgccaaaaatgcagtcccttattttcatcttattgcgtcatgcag----------------------------------