Sequence
atgc intronic sequence ATGC exonic sequenceATAAAAGTGGACCGGAAATGCCGGTTGCCGCTTCCGCCATTTACTTTCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtactctagtttcttccgcttttttctctctcacagtgactgtttggatgaacgttgataaaattgattttgaagtgatgtatgtgatttatgtttgggt...
Basic information
species | Glycine max |
transcript | GLYMA17G16630.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 1
lower sequence: EFJ22278 (Selaginella moellendorffii), 5'ss of exon 1
ATAAAAGTGGACCGGAAATGCCGGTTGCCGCTTCCGCCATTTACTTTCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtactctagtttcttccgcttttttctctctcacagtgactgtttggatgaacgttgataaaattgattttgaagtgatgtat---gtgatttatgtttgggt-----------------------------------------------------------------------
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GTTTGGGCGCATCGATCATGCCGGTCGCGGCTTCCGCGATCTACTTCCTCAACCTGCGAGGGGATGTGCTCATCAATCGCCTCTACAGAGACGATGTCGGgta----agaatcctcc-caattctctccggcatttcgagcgct-agatctagggtgtcctggggcagcacggggtcatatttcgcgagcttttgggtcggctggggcccgagatccagctccggagtgagaatttagggctcttagagtgactggctacgtttaattttgcag
upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 1
lower sequence: EFJ25669 (Selaginella moellendorffii), 5'ss of exon 1
ATAAAAGTGGACCGGAAATGCCGGTTGCCGCTTCCGCCATTTACTTTCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgta-------ctctagtttcttccgcttttttctctctcacagtgactgtttggatgaacgttgataaaattgattttgaagtgatgtatgt-gatttatgtttgggt------------------------------------------------------------
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GTTTGGGCGCATCGATCATGCCGGTCGCGGCTTCCGCGATCTACTTCCTCAACCTGCGAGGGGATGTGCTCATCAATCGCCTCTACAGGGACGATGTCGGgtaagaatcctcccaattctctccggcatttcgagcgctagatctagggtgtcctggggcagcacggggtcatatttcgcgagcttttgggtcggctcgggcccgagatccagctccggagtgagaatttagggctcttagagtgactggctacgtttaattttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209699279|gb|BW670241.1|BW670241EST: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGG GGGAAATATGGTGGATGCTTTTAGGACGCATGTTATGCAAACGAAGGAGCT
genomic: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtactctagt ... tttattgtagGGGAAATATGGTGGATGCTTTTAGGACGCATGTTATGCAAACGAAGGAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAAAGTGGACCGGAAATGCCGGTTGCCGCTTCCGCCATTTACTTTCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtactctagtttcttccgcttttttctctctcacagtgactgtttggatgaacgttgataaaattgattttgaagtgatgtatgtgatttatgtttgggt
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