1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTCCACCAGCTGCTGCTGATAGGAAAGTGGAGATCACTGGCCCTGTGGACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGgttagtttctgcatctacacttatgattactatgttttgttatttcactaaagttgttaaaggttttaaaaaacggtctagtccgtcatttggccacaac...
species | Glycine max |
transcript | GLYMA17G13740.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATG GCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGTEST: gi|193350819|gb|FK318677.1|FK318677
genomic: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGgttagtttct ... aaattctaagGCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGT
EST: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATG GCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATEST: gi|16277254|gb|BI942285.1|BI942285
genomic: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGgttagtttct ... aaattctaagGCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAAT
EST: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATG GCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGTEST: gi|9986108|gb|BE660216.1|BE660216
genomic: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGgttagtttct ... aaattctaagGCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGT
EST: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATG GCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGTEST: gi|193355978|gb|FK319163.1|FK319163
genomic: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGgttagtttct ... aaattctaagGCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGT
EST: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATG GCTGATTTAGAAGATGCAACTAGTACACCGACCTGGGAAAAT
genomic: ACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGgttagtttct ... aaattctaagGCTGATTTAGAAGATGCA-CT-GT-CACCGACCTGGGAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCCACCAGCTGCTGCTGATAGGAAAGTGGAGATCACTGGCCCTGTGGACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGgttagtttctgcatctacacttatgattactatgttttgttatttcactaaagttgttaaaggttttaaaaaacggtctagtccgtcatttggccacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT