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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAAGTTAAGATCTTCGTTGGGAACCTGCCTTTCGACTTCGACAGCGAGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcactgcttagttataataatggtgttttgtttgaggtttcgatgtttggtttgaaataatgtggctgtcgttgtttcag

Basic information

species Glycine max
transcript GLYMA17G13470.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847879|gb|BF070480.1|BF070480
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|298199036|gb|HO042399.1|HO042399
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|26058596|gb|CA801510.1|CA801510
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|17021868|gb|BM092902.1|BM092902
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|5057309|gb|AI735785.1|AI735785
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|298196562|gb|HO041305.1|HO041305
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|31562008|gb|CD487846.1|CD487846
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTAAGGTTGCTGAG                         GTTATATATNATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|26058595|gb|CA801509.1|CA801509
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|17400637|gb|BM177419.1|BM177419
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|19053744|gb|BM732411.1|BM732411
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|298173330|gb|HO016666.1|HO016666
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGG
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGG
EST: gi|120530752|gb|EH258885.1|EH258885
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|15203609|gb|BI426377.1|BI426377
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|120534064|gb|EH262197.1|EH262197
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: gi|31467356|gb|CD409384.1|CD409384
EST:     AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG                         GTNATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC