1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CATGGAGATGGAACGCGTCTTCGAGTTTCCTCACACTCACATGGATCGGCGCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaactttttgatcctaaaatctcagatctgatttttttcttcttcttgttttgcggttttatcttttctggttgtagatctggtgggatttgtgtagat...
species | Glycine max |
transcript | GLYMA17G13440.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|192295348|gb|FG986002.1|FG986002
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|208156834|gb|GD956304.1|GD956304
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGGGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|207714419|gb|GD695898.1|GD695898
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|6454636|gb|AW185319.1|AW185319
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|15286579|gb|BI470470.1|BI470470
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|17022467|gb|BM093501.1|BM093501
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|23064326|gb|BU579099.1|BU579099
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|9901661|gb|BE610629.1|BE610629
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|23064408|gb|BU579181.1|BU579181
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGAGATGGAACGCGTCTTCGAGTTTCCTCACACTCACATGGATCGGCGCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaactttttgatcctaaaatctcagatctgatttttttcttcttcttgttttgcggttttatcttttctggttgtagatctggtgggatttgtgtagat
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