1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TATTGAATTCAGCACAGGCCTTGGCTGCACACACTTTCCTTTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTGgtttgtttttcttcccagaaccctttcaattcaacgccgattttctatttgtctgcttctttattattattattattattattattattattattattat...
species | Glycine max |
transcript | GLYMA17G13040.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTG GGTAATATTTTCACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGEST: gi|6070502|gb|AW099889.1|AW099889
genomic: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTGgtttgttttt ... taatatacagGGTAATATTTTCACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
EST: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTG GGTAATATTTTCACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGEST: gi|192294212|gb|FG986301.1|FG986301
genomic: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTGgtttgttttt ... taatatacagGGTAATATTTTCACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
EST: ACTCTCTTCCTCGTTCTCAAGCTCGAACACAACCTCTCTTGTTCTTGGTG GGTAATATTTTCACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
genomic: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTGgtttgttttt ... taatatacagGGTAATATTTTCACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGAATTCAGCACAGGCCTTGGCTGCACACACTTTCCTTTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTGgtttgtttttcttcccagaaccctttcaattcaacgccgattttctatttgtctgcttctttattattattattattattattattattattattattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc