Sequence
atgc intronic sequence ATGC exonic sequenceAGAGGGTTGCCCCGTCTCCGAGCCCGACGGTTTGGGCTACTACGCGCTTCAGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGgttctttgatcggtttgttgaattgcgtttgctttgcttacttgagcttgtcccttatgcatcccttgttttgccactcactgaatcgttactatttgtt...
Basic information
species | Glycine max |
transcript | GLYMA17G11600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 5'ss of exon 1
AGAGGGTTGCCCCGTCTCCGAGCCCGACGGTTTGGGCTACTACGCGCTTCAGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGgttctttgatcggtttgttgaattgcgtttgctttgcttacttgagcttgtcccttatgcatcccttgttttgccactcactgaatcgtt--actatttgtt--
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GGAGGGCCACCCGGTCACGGAGCCCGACGGCCTCGGCTACCACGCGCTCCAGTGGGCCGCCCTCAACAACCGCGTCGCCGCCGCGCAGTACATCCTCGAGgttttcccccctcctgcttcccgcccgagcgtctcgcg-atttgg--ctggccttcgtgtagtcgttgttt-gctagctagcgagggatttgggtgggggtttg
upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G087806_T01 (Zea mays), 5'ss of exon 1
AGAGGGTTGCCCCGTCTCCGAGCCCGACGGTTTGGGCTACTACGCGCTTCAGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGgtt--ctttgatcggtttgttgaattgcgtttgctttgcttacttgagcttgtcccttatgcatcccttgttttgccactcactga-atcgttactatttgtt
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GGAGGGCCGCCCAGTCACCGAGCCCGACGGCGGGGGCTACCACGCGCTTCAGTGGGCCGCACTCAACAACCGCGTTGCCGCCGCGCAGTACATCCTTGAGgttgccctctcccccctcccgcacctgcgcctccctaaacgcctcgcaatttggccttttatttgtactcgttcgccttgcgttgctatttaggggattt---
upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G024437_T02 (Zea mays), 5'ss of exon 1
AGAGGGTTGCCCCGTCTCCGAGCCCGACGGTTTGGGCTACTACGCGCTTCAGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGgttctttgatcggtttgttgaattgcgtttgctttgcttacttgagcttgtcccttatgcat---cccttgttttgc-cactcactgaatcgttactatttgtt
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GGAGGGCCGCCCGGTCACCGAGCCCGACGGCGGGGGCTATTACGCGCTCCAGTGGGCCGCGCTCAACAACCGCGTCGCCGCCGCGCAGTACATCCTCGAGgttgccctctccccccgctcccgtgccccctccaacgcctcgcaatttggccttctatttgtagacgttcgttttgcgttgctattgggggatttggggt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254317845|gb|GR826829.1|GR826829EST: AGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAG CATGGGGGAGATGTAAATGCAACAGATCATACTGGTCAGACGGCCTTACAT
genomic: AGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGgttctttgat ... tggttggcagCATGGGGGAGATGTAAATGCAACAGATCATACTGGTCAGACGGCCTTACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGGGTTGCCCCGTCTCCGAGCCCGACGGTTTGGGCTACTACGCGCTTCAGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGgttctttgatcggtttgttgaattgcgtttgctttgcttacttgagcttgtcccttatgcatcccttgttttgccactcactgaatcgttactatttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT