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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCGCAGGGACGCCCTCGGCAACACTCTCTTTCGCAAGCTCGTAGGTTGCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcattccctttgtttccactttttgatttaatttgtattgtttttcatttgaataattccttgaattgcaatgtggcattgtacctgtctgtctt...

Basic information

species Glycine max
transcript GLYMA17G10930.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193665778|gb|FK609665.1|FK609665
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|298197706|gb|HO045185.1|HO045185
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|298192565|gb|HO036647.1|HO036647
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|207709043|gb|GD690529.1|GD690529
EST:     GGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|192329633|gb|FK021919.1|FK021919
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|193551740|gb|FK508567.1|FK508567
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAA-                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|15203849|gb|BI426617.1|BI426617
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|298183077|gb|HO028340.1|HO028340
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAGGCAACAGTTA
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAGGCAACAGTTA
EST: gi|298180911|gb|HO022350.1|HO022350
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|298198364|gb|HO039903.1|HO039903
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|298163375|gb|HO012108.1|HO012108
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|192304090|gb|FG993906.1|FG993906
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|151409235|gb|EV279043.1|EV279043
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|208328687|gb|GE126275.1|GE126275
EST:     TTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: TTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|22928803|gb|BU545942.1|BU545942
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|10844364|gb|BF067663.1|BF067663
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|7691121|gb|AW759254.1|AW759254
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
EST: gi|151395286|gb|EV265157.1|EV265157
EST:     GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAG                         GGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG
genomic: GCCCCGGTTGTCTCTGCCATGACTACGACCACATTATTCCTTACTCTAAGgtcatgcatt ... taaactacagGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAG