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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGTGCAATACAAGGATGGCAGGCACTCTCTTTCGTTTATTCGTGATTCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAAgtaaattctactgctatatttctatttgtattctggtagagttatagttccccttcattttcttacaaatggctttttatataagcag

Basic information

species Glycine max
transcript GLYMA17G10910.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189094|gb|HO037497.1|HO037497
EST:     TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAA                         GAACTGAAAACCTTATGCAAGGTCCCCAAGTTCGCCTTACTCTGGAGAACA
genomic: TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAAgtaaattcta ... atataagcagGAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA
EST: gi|298172337|gb|HO019377.1|HO019377
EST:     TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAA                         GAACTGAAAACCTTATGCAAGGTCCCCAAATTCACCTTACTCTGGAGAACA
genomic: TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAAgtaaattcta ... atataagcagGAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA
EST: gi|31310169|gb|CD395372.1|CD395372
EST:     CTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAA                         GAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA
genomic: CTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAAgtaaattcta ... atataagcagGAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA
EST: gi|31465481|gb|CD407509.1|CD407509
EST:     TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAA                         GAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA
genomic: TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAAgtaaattcta ... atataagcagGAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA
EST: gi|151411042|gb|EV280853.1|EV280853
EST:     TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAA                         GAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA
genomic: TCTTCTAGGGCTTTCTCATCTTATGTGCTTGAAAGCAGTCCCAGTTACAAgtaaattcta ... atataagcagGAACTGAAAACCTTATGCAAGGTCCCCAAGTTCACCTTACTCTGGAGAACA