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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgtcatttatttactttgaatttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacggtgaata...

Basic information

species Glycine max
transcript GLYMA17G09970.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 1
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactcc-ttgtcattt--atttactttgaatttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacggtgaata
|| |||||||| |||||||| ||||||||||| ||||| || || || || ||||||||| ||||||| || ||||||||||| || || || || |||||||  |     |   |||   ||  |  |  |||    ||   ||    |       ||| |  |||   |      |  || |||||      |  |     
CACTCCGTGGAGCACTACACCCAGGTCAAGCTTAAGAAGCGCGGCTCCGACACCAAGTACCTGGCCACGGTCCTCGCCATTGGGACGGAGTGCGACATTGgtatgatttccccttctctgctgcaacctgcattgttctttccttctcaattgttgcaattgtagtacttatccaatgcttcctaagattgctccaatag---

upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 1
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgtcatttattta---ctttgaatttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacg-gtgaata
|| ||||| || |||||||| ||||||||||| |||||  | || || |||||||| ||| | ||||| || ||||| ||||| ||||| ||||| |||||||   |    | |    | ||  | ||   ||   || || | |   |     |  |   ||    | | |||||    | | | | ||||  |  ||||   
CACTCCGTCGAGCACTACACCCAGGTCAAGCTTAAGAAGAGGGGATCGGATACCAAATACCTTGCCACCGTTCTCGCTATTGGCACCGAGTGTGACATTGgtatgtatagcccacactcgtgcgactttactaggactatggactagtttttg-gcaatcggaatccttgcaatgtttggtaaaatggcaatgtcctgtga---

upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 2
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgtcatttatttactttgaat-ttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacggtgaata----
|| || || || || ||||| ||||||||||||||||| ||||| || || ||||||||| | || ||||| || ||||| || ||||| ||||| |||||||    |  ||||    |   ||||||       |  ||| || | | | |  | |  |     |||   |||||    |   | |||| | | | ||      
CACTCGGTTGAGCATTACACCCAGGTCAAGCTCAAGAAGCGTGGCTCGGACACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgta-tgcatcactagactcgcctcattttaacctgtgaaatattgacataccttgtactgtgagctagt--tgtagttgtacttg-caatga-gctaaactttgt

upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 1
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgt--catttatttactttgaatttca--tacaacgagaatagatgtatag--aaatgtagaatcataagacaataacggtgaata
||||| || || ||  | || || || || |||||||| ||||| |||||||| ||||| ||||| || ||  | ||||||||||| |||||||| |||||||   | |   || ||  ||    ||| | ||| || |   ||| |  | |||  |||||   |   |||  | |  |    | |  |   ||| || |      
CATTCTGTTGAGCATCATACTCAAGTTAAACTCAAGAAGCGTGGCTCTGATACTAAGTATTTGGCTACAGTCTTGGCCATTGGAACTGAATGTGACATTGgtatggatcttgtatctaatttctgcatctgttttctgttgttttgagttgcaat-agaatttttaagtagtcagaattgattttagtatgtaattacagc-----

upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 1
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgtcatttatttactttgaatttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacggtgaata
||||| ||||| || || || ||||| |||||||||||||| |||||||||  |||||| |||||||||||||| |||||||| || || || ||||||||||     |      | | || ||| || | |    |   |||  |      || ||  |  | | |   | ||  | |  | |        |    | |
CATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatgtttccttacccccattttcaattgtgttgaattgtttttgtttgtttaggattaagatttcgttttctaacacctaagggtgtgtttgaatcaga

upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S1_203V6.1 (Physcomitrella patens), 5'ss of exon 2
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgtcatttatttactttgaatttcatacaacgagaatagatgt-atagaaatgtagaatcataagacaataacggtgaata-
||||| ||||| ||| | ||||| || ||| | ||||||||||| || |||||||||||| ||||||| || || || ||||| |||||||| || || ||| |       |   |||   |   | ||         |||||    ||     |||||  ||  ||   |||| |   || |  |  || |  | |  |  
CATTCGGTGGAGCACCATACGCAAGTGAAGGTAAAGAAACGTGGCTCGGATACCAAGTACCTGGCCACGGTTCTTGCGATTGGTACCGAATGCGACATAGgtcagtttttgccttctctacgagctctacaatgaaccaattttg-gcatgtgaaatagcagtcgtacctatgttgtg-cacatcatgatgaacgcgtgttg

upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S176_87V6.1 (Physcomitrella patens), 5'ss of exon 2
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgtcatttatttactttgaatttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacggtgaata----
|| || ||||| ||| | |||||||| ||| | |||||||| || || ||||| |||||||||||||| ||||| || |||||||||||||| ||||| ||| |    |  |  | | | ||       | | |   |       |||     ||  |  || |        |    ||     |  |  | | ||| |     
CACTCAGTGGAGCACCATACGCAGGTGAAGGTGAAGAAACGGGGATCGGATACAAAGTACTTGGCCACAGTGCTTGCGATTGGAACCGAATGCGATATAGgtcagttgctgcccagtgcatg---agcgtgtgcgaggggccgagtacggtacgaggacgtgcaggcggtcatgcggtctccgcaatacga-gctgagtgtgac

upper sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ16952 (Selaginella moellendorffii), 5'ss of exon 1
CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaa-----caaacaacta-actccttgtcatttatttactttgaatttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacggtgaata
|| || ||||| ||  |||| ||||| ||| ||||||| || || || || ||||||||| ||||||  || || |||||||||||||| ||||| |||||| |     ||| |   ||   |  || | | || |||   ||   ||   |        |                                             
CACTCGGTGGAGCATCACACACAGGTGAAGATCAAGAAGCGAGGCTCGGACACCAAGTACCTGGCCAACGTTCTTGCCATTGGAACCGAGTGTGACATTGgtgagtttccaagcttttatggtgtttatgacttctttttgtttgcttctttgttctatcag--------------------------------------------