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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaacattgctctctgttttctgatcttcattttgttctattctttcaccattgagcttgtttctgatgtatctgtatgtatatgcag

Basic information

species Glycine max
transcript GLYMA17G09670.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0127g00450.t01 (Vitis vinifera), 5'ss of exon 1
ATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgta-acgaacattgctctctgttttctgatcttcattttgttctattctttcaccattgagcttg----tttctgatgtat-ctgtatgtatatgcag--
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ATGAAGCTTCAAATCAAGGTCGATGATCAAACCGGAAAGATCGTCGATGCTTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtatttatttatttatttttcttttttcttacgtgaaatcaaaatgaaataaaggaaattgggattttctgaattatacaaccggttcccttaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425514|gb|FK386533.1|FK386533
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGG-TGAAGGGAAGGCAAATGGAGGAAGTTCTGAACTATAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGA-CTATAAAA
EST: gi|58022474|gb|CX709215.1|CX709215
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|58022153|gb|CX708894.1|CX708894
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA