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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaacattgctctctgttttctgatcttcattttgttctattctttcaccattgagcttgtttctgatgtatctgtatgtatatgcag

Basic information

species Glycine max
transcript GLYMA17G09670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0127g00450.t01 (Vitis vinifera), 5'ss of exon 1
ATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgta-acgaacattgctctctgttttctgatcttcattttgttctattctttcaccattgagcttg----tttctgatgtat-ctgtatgtatatgcag--
|||||||| || || |||||||| ||  |||||||||| |||||||||||| | ||||| || || || ||||| |||||||| || |||||||| || |||        |||  | | | |||  |  |  | |  |      |   |   |  |  ||  |||    |||||||  ||| |     ||      |   
ATGAAGCTTCAAATCAAGGTCGATGATCAAACCGGAAAGATCGTCGATGCTTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtatttatttatttatttttcttttttcttacgtgaaatcaaaatgaaataaaggaaattgggattttctgaattatacaaccggttcccttaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403527|gb|EV273337.1|EV273337
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|58021580|gb|CX708321.1|CX708321
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|298175212|gb|HO018093.1|HO018093
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|16277293|gb|BI942305.1|BI942305
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|193425514|gb|FK386533.1|FK386533
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGG-TGAAGGGAAGGCAAATGGAGGAAGTTCTGAACTATAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGA-CTATAAAA
EST: gi|209700505|gb|BW667293.1|BW667293
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|12689020|gb|BG155365.1|BG155365
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|209722514|gb|BW682612.1|BW682612
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|16279047|gb|BI943229.1|BI943229
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|58024536|gb|CX711277.1|CX711277
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|21675146|gb|BQ627506.1|BQ627506
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|12690106|gb|BG156442.1|BG156442
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|19348064|gb|BM892596.1|BM892596
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|16282263|gb|BI944922.1|BI944922
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|298199150|gb|HO042513.1|HO042513
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST: gi|16282005|gb|BI944785.1|BI944785
EST:     TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG                         CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA