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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTgtaagtgttggtaaatttcccactgttcaaaatgcactctgttaaaatgacatgcaagaaatggttggttggacacatttaggaaagatctataccaaag...

Basic information

species Glycine max
transcript GLYMA17G09020.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09020.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G73990.1 (Arabidopsis thaliana), 5'ss of exon 8
----------------------------CCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTgtaagtgttggtaa-atttcccactgttcaaaatgcactctgttaaaatg-acatgcaagaaatggttggttggacacatttaggaaagatctataccaaag
                            ||||||||||||||||||||| |||||||| |||||||||||||||||  |  ||    ||  || || |    |||   |    || |||  ||  | | ||  |      |     |   || ||       | || ||   
AGTCCAAAAAATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATTTgtaagtagttatattgattgtcagtgct--gtatgattttacctacaatatactcgtatgatttaacatttcttgaattgtttggttcaccttctaacatga

upper sequence: GLYMA17G09020.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g04690.t01 (Vitis vinifera), 5'ss of exon 4
----------------------------CCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTgtaagtgttggtaaattt---cccactgttcaaaatgcactctgttaaaatgacatgcaagaaatggttggttggacacatttaggaaag-atctataccaaag
                             || |||||||| || ||||| |||||||||||||||||||||||||||||| || |||    |    || |  || ||   | || | || |   ||  ||||        |   || |  || |  |||  || ||||    | 
ATTCAAAAAGATATAAGGCTGTTATCATTCGCATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATTTgtaagtgttgctatattctggctttatgatataagtgatatttgatgaagtcctatttaagactcaa---gccagaaaagttcataaaattatttataatgta-