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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATTCCCTCTGCGTTCTCCAACGAGGAAACTCATGTCGCACACTCTCGCACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaaactcgttaactagtttttctcattcaatctaacgtgcccaggttttgtttaactctttatatgatttaacgatgtaaaaagttaataact...

Basic information

species Glycine max
transcript GLYMA17G08150.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208146775|gb|GD945842.1|GD945842
EST:     CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG                         ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: gi|298166473|gb|HO009912.1|HO009912
EST:     CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG                         ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: gi|7684931|gb|AW755579.1|AW755579
EST:     CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG                         ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: gi|151410948|gb|EV280763.1|EV280763
EST:     CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG                         ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: gi|18041115|gb|BM309409.1|BM309409
EST:     CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG                         ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: gi|213595368|gb|DB968458.1|DB968458
EST:     CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG                         ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT