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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCTGCTTGGCATTACATTTTGGTGCAGACTTATTTCAACCCCGACGAACACTGGCAGGGCCCCGAGGTCGCTCATCGCATCGCCTTTGGgtaccgttccattcatttcccctttcatgttttcatgttcgtttcttcgtgaatgcctcataagctctgatctggcag

Basic information

species Glycine max
transcript GLYMA17G07620.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g39810.1 (Oryza sativa), 5'ss of exon 1
------TTCTCTGCTTGGC-ATTACATT-TTGGTGCAGACTTATTTCAACCCCGACGAACACTGGCAGGGCCCCGAGGTCGCTCATCGCATCGCCTTTGGgtaccgttccattcatttcccctttcatgttttcatgttcgtttctt-cgtgaatgcc--tcataagctctgatctggcag------------------------------------------
         || ||  ||| |   |  |  ||||||  || || |||||||||||||| ||||||||| ||| ||||||||| || ||||||| ||| |||||    ||    |    | | |  |  || || |  ||||  ||   || | |  ||  ||  | |   ||   ||                                              
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgc---cctcttcgccggtgtttagcttcgaatccagcgggcactccagtccaagggagtgggatgcttaagctgctgcattttgtgagccttctctgttcgttcgttgcag

upper sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 1
------TTCTCTGCTTGGC-ATTACATT-TTGGTGCAGACTTATTTCAACCCCGACGAACACTGGCAGGGCCCCGAGGTCGCTCATCGCATCGCCTTTGGgta-------ccgttccattcatttcccctttcatgttttcatgttcgtttcttcgtgaatgcctcataagc--tctgatctggcag-------------------------------------------------------------------
         || ||  ||| |   |  |  ||||||  || || |||||||||||||| ||||||||| ||| ||||||||| || ||||||| ||| |||||       |||   |   |    || |   |      |  ||| ||     |  |      ||  ||||     |||  | | |                                                                    
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccgccgccgccgccgccgccgctggctgttgtgcgccggcttttagtctgcttgtaagtcgcttgaaatcgaaatagaatccagctgacactctcaaagggagtgggatacttgaactgccgcattttctgttcactgcag

upper sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 3
------TTCTCTGCTTGGC-ATTACATT-TTGGTGCAGACTTATTTCAACCCCGACGAACACTGGCAGGGCCCCGAGGTCGCTCATCGCATCGCCTTTGGgtaccgttccattcatttcccctttcatgttttcat-gttcgtttcttcgtgaatgcctcataagctctgatctggcag----------------------
         || ||  ||| |   | ||  | ||||  || || |||||||||||||| ||||||||| ||| ||||||||| || ||| |||| || ||||| | |  |  ||   |  |  ||  ||  | | | | | || |         |||  | | |  |  |||| ||  |                      
CGCTGGCGTTCCGCGCGGCCAACGCGTTGCTCGTGCGCACATACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCGTCGCGTTCGGgtaacctcgccctcgccttgctgttgctgcctgcttcgctggtgttagttacggtgcgccctgaattg-gatccggttgctcaccactgcttggctcgagg