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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATAGTGTTCACCAAATTGTTTTCCTCTCTTTTCGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcctacctctctgcttctctcactcaccatccgatttgaatttgctgtttctcgaatttgattcgttcgattttattaccttccttttcag

Basic information

species Glycine max
transcript GLYMA17G07390.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07390.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 5'ss of exon 1
GGAATAGTGTTCACCAAATTGTTTTCCTCTCTTTTCGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcctacctctctgcttctctcactcaccatccgatttgaatttgctgtttc----tcgaatttgattcgttcgattttattaccttc-cttttcag
|| || || |||||     | || || ||  | ||||| |||   || || || |||||||| ||||||||||||||||||||||| ||||| || || |||| ||   | ||||| |     | |  ||||  ||||  || | |  | || || ||    ||| || ||||  |   | || | ||   ||  | |  |||
GGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATgtaagc---ccacctcgcc----ccccgactc--catcgaatgtaatctcgccgtctccacctcggatctgatctgggtgcttgtgtttttttttcctcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164029|gb|HO013674.1|HO013674
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|298181091|gb|HO022530.1|HO022530
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|15813660|gb|BI785935.1|BI785935
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|12689317|gb|BG155653.1|BG155653
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|298186094|gb|HO036727.1|HO036727
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ACCGCCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|120532471|gb|EH260604.1|EH260604
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|193708401|gb|FK645423.1|FK645423
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|298194453|gb|HO041101.1|HO041101
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA