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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAATTACCGCTTCGAGATCTCGCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtaccttcttcttgcactccctttacttaatcatcttccatttatttcattcacttaacctgcatcttcataactgagtgatttcaatgcttgctcgctttgagtgtgtagaaggtcacacgatgtgattaattgtgccttattttctaatttattttcgtcctcgtgttttttgcag

Basic information

species Glycine max
transcript GLYMA17G07060.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605874|gb|DB968626.1|DB968626
EST:     GCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|151395000|gb|EV264871.1|EV264871
EST:     GCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|209725386|gb|BW651543.1|BW651543
EST:     GTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|26059688|gb|CA802602.1|CA802602
EST:     TTTCAGCGAGCATTCCT--AATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: TTTCAGCGAGCATT-CTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|207685906|gb|GD668230.1|GD668230
EST:     GCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACT
genomic: GCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACT
EST: gi|9899832|gb|BE608800.1|BE608800
EST:     AGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: AGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|18040343|gb|BM308637.1|BM308637
EST:     TTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: TTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|21602785|gb|BQ613116.1|BQ613116
EST:     AAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: AAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31308984|gb|CD394187.1|CD394187
EST:     ATCTCGCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: ATCTCGCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|213593117|gb|DB983405.1|DB983405
EST:     GTTCCAGGTTTCAGCGAGCATAT-TACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GTTCCAGGTTTCAGCGAGCAT-TCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|209724399|gb|BW658168.1|BW658168
EST:     GCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|9819380|gb|BE554893.1|BE554893
EST:     CCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|19269894|gb|BM886150.1|BM886150
EST:     CCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31560910|gb|CD486748.1|CD486748
EST:     GTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31462481|gb|CD404509.1|CD404509
EST:     GCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|192327917|gb|FK022462.1|FK022462
EST:     GCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAGTTTGACTGGGAAGCCT
genomic: GCAGCGTCCCAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|21256683|gb|BQ453571.1|BQ453571
EST:     CCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|15204194|gb|BI426962.1|BI426962
EST:     CATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31308447|gb|CD393650.1|CD393650
EST:     CAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCGAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|193595647|gb|FK552286.1|FK552286
EST:     TTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: TTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|14195915|gb|BE819926.2|BE819926
EST:     CTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|18039184|gb|BM307478.1|BM307478
EST:     GAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31305712|gb|CD390915.1|CD390915
EST:     CAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|214009878|gb|DB987526.1|DB987526
EST:     AAGTTCCAGGTTTCAGCGAGCATACTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: AAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|19053095|gb|BM731762.1|BM731762
EST:     CGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31305547|gb|CD390750.1|CD390750
EST:     GTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|254343494|gb|GR857250.1|GR857250
EST:     GCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31456379|gb|CD398407.1|CD398407
EST:     GAGCATTCTACTATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACTATTTGACTGGGAAGCCT
genomic: GAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|213603532|gb|DB970517.1|DB970517
EST:     AAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: AAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31457843|gb|CD399871.1|CD399871
EST:     CAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31561042|gb|CD486880.1|CD486880
EST:     CAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: CAAGTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
EST: gi|31459011|gb|CD401039.1|CD401039
EST:     GTTCCAGGTTTCAGCGAGCATTCTACAATGGCT                         ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT
genomic: GTTCCAGGTTTCAGCGAGCATTCTACAATGGCTgtgagtacct ... ttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCT