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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGTCGAGAAGCTTCCCGAAATCGAAGTCGACGACGGCACCAAGAAGGTCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtatacttatttaaactcagtaattatatttttttctcttaacctcgctttaattgaattccgcgtttcaacag

Basic information

species Glycine max
transcript GLYMA17G07050.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g14570.1 (Oryza sativa), 5'ss of exon 1
CGTCGTCGAGAAGCTTCCCGAAATCGAAGTCGACGACGGCACCAAGAAGGTCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtatacttatttaaa---ctcagtaattat-atttttttctcttaacctcgctttaatt-gaatt--ccgcgtttcaacag-------------------
|  ||  | |         ||   ||  | || |||||| |  |||  ||||||| || |||||||||| || |||||||||||||| |||||||||||||||| | |   |  |   ||     || || ||  |  |   || ||   |  ||  || |||||    |||||  ||                      
CTCCGCGGCGGCCGGGGAGGAGGCCGGCGGCGCCGACGGGAGGAAGCGGGTCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAGgtatccatccatcgattgctaccccatcatgatgatgatgaattgacggtgaattgtttcgaattgtttgcgttcgaaataattccaacaatattgggat

upper sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G144407_T01 (Zea mays), 5'ss of exon 2
CGTCGTCGAGAAGCTTCCCGAAATCGAAGTCGACGACGGCACCAAGAAGGTCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtatacttatttaaactcagtaat-tatatttttttctcttaacctcgctttaattgaattccgcgtt-tcaacag------------------------
   || |||| ||      || |     | |||||||||||  |||||||||||| || |||||||||| || |||||||||||||| || |||||||||||     |   | |     |   |  ||   |  | |    ||  |   | | |  | | |  | |||  | | ||                        
GAGCGCCGAGGAGGAGGAGGAGAAGCCGGCCGACGACGGCAGGAAGAAGGTCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGGTTCGCCAAGgtgcgtgtgcgtcatgcgtgcgctgcatgcctgctgcaaccaaatttcttcttacggtaatgagagttaccgaaagacaggtcgcctcttagtttctccc

upper sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 1
lower sequence: AC217947.4_FGT002 (Zea mays), 5'ss of exon 1
------CGTCGTCGAGAAGCTTCCCGAAATCGAAGTCGACGACGGCACCAAGAAGGTCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgt-----atacttatttaaact--cagtaattatat------ttttttctcttaacctcgctttaattgaattccgcgtttcaacag-------------
       | || |||| ||      |||  ||  | |||||||||||  || ||||||||| || |||||||||| || ||||||||| |||| || || ||||||||     || |     |   ||  ||  ||  | ||      |  | |||  |  |  |  | || ||      || |||| |  |              
CGGTAAGGCCGCCGAGGAGGA----GAAGCCG--GCCGACGACGGCAGGAAAAAGGTCACCGTCTTCTTCGGCACGCAGACCGGCACCTCCGAGGGGTTTGCCAAGgtgcgtcatgcgcgcgttgcctgccataaaccagatcaatcgtcatctcttatgtctcctgtatagtttctcctcgtgtttgacgacttctaggtggtga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346950|gb|GR856672.1|GR856672
EST:     TCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAG                         GCCACAGCTGAAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTC
genomic: TCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtatacttat ... gtttcaacagGCCACAGCTGAAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTC
EST: gi|254318784|gb|GR830348.1|GR830348
EST:     TCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAG                         GCCACAGCTGAAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTC
genomic: TCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtatacttat ... gtttcaacagGCCACAGCTGAAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTC
EST: gi|213615154|gb|DB963366.1|DB963366
EST:     TCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAG                         GCCACAGCTGAAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTC
genomic: TCACCATCCTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtatacttat ... gtttcaacagGCCACAGCTGAAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTC