Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAACACTATTACTACTCAGAGTCACACGCAGAGCCCAGAAAAGAAGCTCTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGGgtaaaactctccgacaatccctatttacatcattctccctctctaactcttccttttctttgcag

Basic information

species Glycine max
transcript GLYMA17G07040.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322486|gb|FK014967.1|FK014967
EST:     CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGG                         CCACCTTCTCAATCTTCCTTCACAGCCGG
genomic: CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGGgtaaaactct ... ttctttgcagCCACCTTCTCAATCTTCCTTCACAGCCGG
EST: gi|209709784|gb|BW674000.1|BW674000
EST:     CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGG                         CCACCTTCTCAATCTTCCTTCACAGCCGG
genomic: CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGGgtaaaactct ... ttctttgcagCCACCTTCTCAATCTTCCTTCACAGCCGG
EST: gi|208175443|gb|GD976838.1|GD976838
EST:     CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGG                         CCACCTTCTCAATCTTCCTTCACAGCCGG
genomic: CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGGgtaaaactct ... ttctttgcagCCACCTTCTCAATCTTCCTTCACAGCCGG
EST: gi|298168870|gb|HO009800.1|HO009800
EST:     CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGG                         CCACCTTCTCAATCTTCCTTCACAGCCGG
genomic: CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGGgtaaaactct ... ttctttgcagCCACCTTCTCAATCTTCCTTCACAGCCGG
EST: gi|207689600|gb|GD671993.1|GD671993
EST:     CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGG                         CCACCTTCTCAATCTTCCTTCACAGCCGG
genomic: CTTTCTCTCTAACAACAATGCCTCCCACTGACGGAGACTTGGATCTTAGGgtaaaactct ... ttctttgcagCCACCTTCTCAATCTTCCTTCACAGCCGG